PDB entry 1yrb
View 1yrb on RCSB PDB site
Description: PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi
Class: hydrolase
Keywords: GTP binding protein, GTPase, P-loop, Rossmann Fold, GDP, HYDROLASE
Deposited on
2005-02-03, released
2006-02-14
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-10-11, with a file datestamp of
2017-10-06.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.39
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ATP(GTP)binding protein
Species: Pyrococcus abyssi [TaxId:29292]
Gene: pab0955
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1yrba2, d1yrba3 - Chain 'B':
Compound: ATP(GTP)binding protein
Species: Pyrococcus abyssi [TaxId:29292]
Gene: pab0955
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1yrbb2, d1yrbb3 - Heterogens: MG, GDP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1yrbA (A:)
mrgshhhhhhgmasmivvfvgtagsgkttltgefgrylednykvayvnldtgvkelpyep
sidvrefvtveeimregygpngaivesydrlmekfneylnkilrlekendyvlidtpgqm
etflfhefgvrlmenlpyplvvyisdpeilkkpndycfvrffallidlrlgattipalnk
vdllseeekerhrkyfedidyltarlkldpsmqglmaykmcsmmtevlppvrvlylsakt
regfedletlayehyctcgdlt
Sequence, based on observed residues (ATOM records): (download)
>1yrbA (A:)
mrgshhhhhhgmasmivvfvgtagsgkttltgefgrylednykvayvnldtgvkelpyep
sidvrefvtveeimregygpngaivesydrlmekfneylnkilrlekendyvlidtpgqm
etflfhefgvrlmenlpyplvvyisdpeilkkpndycfvrffallidlrlgattipalnk
vdllseeekerhrkyfedidyltarlkldpsmqglmaykmcsmmtevlppvrvlylsakt
regfedletlayehyctcg
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1yrbB (B:)
mrgshhhhhhgmasmivvfvgtagsgkttltgefgrylednykvayvnldtgvkelpyep
sidvrefvtveeimregygpngaivesydrlmekfneylnkilrlekendyvlidtpgqm
etflfhefgvrlmenlpyplvvyisdpeilkkpndycfvrffallidlrlgattipalnk
vdllseeekerhrkyfedidyltarlkldpsmqglmaykmcsmmtevlppvrvlylsakt
regfedletlayehyctcgdlt
Sequence, based on observed residues (ATOM records): (download)
>1yrbB (B:)
mrgshhhhhhgmasmivvfvgtagsgkttltgefgrylednykvayvnldtgvkelpyep
sidvrefvtveeimregygpngaivesydrlmekfneylnkilrlekendyvlidtpgqm
etflfhefgvrlmenlpyplvvyisdpeilkkpndycfvrffallidlrlgattipalnk
vdllseeekerhrkyfedidyltarlkldpsmqglmaykmcsmmtevlppvrvlylsakt
regfedletlayehyctcgd