PDB entry 1ypo

View 1ypo on RCSB PDB site
Description: Human Oxidized Low Density Lipoprotein Receptor LOX-1 P3 1 21 Space Group
Class: immune system
Keywords: Oxidized Low Density Lipoprotein receptor, Lox-1,CTLD, C-type lectin like domain, NK Cell receptor
Deposited on 2005-01-31, released 2005-02-08
The last revision prior to the SCOP 1.73 freeze date was dated 2005-05-17, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.228
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: oxidised low density lipoprotein (lectin-like) receptor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ypoa1
  • Chain 'B':
    Compound: oxidised low density lipoprotein (lectin-like) receptor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot P78380 (1-131)
      • initiating methionine (0)
    Domains in SCOP 1.73: d1ypob1
  • Chain 'C':
    Compound: oxidised low density lipoprotein (lectin-like) receptor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot P78380 (1-131)
      • initiating methionine (0)
    Domains in SCOP 1.73: d1ypoc1
  • Chain 'D':
    Compound: oxidised low density lipoprotein (lectin-like) receptor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ypod1
  • Chain 'E':
    Compound: oxidised low density lipoprotein (lectin-like) receptor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ypoe1
  • Chain 'F':
    Compound: oxidised low density lipoprotein (lectin-like) receptor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot P78380 (1-End)
      • initiating methionine (0)
    Domains in SCOP 1.73: d1ypof1
  • Chain 'G':
    Compound: oxidised low density lipoprotein (lectin-like) receptor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot P78380 (1-131)
      • initiating methionine (0)
    Domains in SCOP 1.73: d1ypog1
  • Chain 'H':
    Compound: oxidised low density lipoprotein (lectin-like) receptor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1ypoh1

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ypoA (A:)
mapcpqdwiwhgencylfssgsfnweksqekclsldakllkinstadldfiqqaisyssf
pfwmglsrrnpsypwlwedgsplmphlfrvrgavsqtypsgtcayiqrgavyaencilaa
fsicqkkanlra

    Sequence, based on observed residues (ATOM records): (download) 
    >1ypoA (A:)
apcpqdwiwhgencylfssgsfnweksqekclsldakllkinstadldfiqqaisyssfp
fwmglsrrnpsypwlwedgsplmphlfrvrgavsqtypsgtcayiqrgavyaencilaaf
sicqkkanlr

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ypoB (B:)
mapcpqdwiwhgencylfssgsfnweksqekclsldakllkinstadldfiqqaisyssf
pfwmglsrrnpsypwlwedgsplmphlfrvrgavsqtypsgtcayiqrgavyaencilaa
fsicqkkanlra

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ypoC (C:)
mapcpqdwiwhgencylfssgsfnweksqekclsldakllkinstadldfiqqaisyssf
pfwmglsrrnpsypwlwedgsplmphlfrvrgavsqtypsgtcayiqrgavyaencilaa
fsicqkkanlra

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1ypoD (D:)
mapcpqdwiwhgencylfssgsfnweksqekclsldakllkinstadldfiqqaisyssf
pfwmglsrrnpsypwlwedgsplmphlfrvrgavsqtypsgtcayiqrgavyaencilaa
fsicqkkanlra

    Sequence, based on observed residues (ATOM records): (download) 
    >1ypoD (D:)
apcpqdwiwhgencylfssgsfnweksqekclsldakllkinstadldfiqqaisyssfp
fwmglsrrnpsypwlwedgsplmphlfrvrgavsqtypsgtcayiqrgavyaencilaaf
sicqkkanl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1ypoE (E:)
mapcpqdwiwhgencylfssgsfnweksqekclsldakllkinstadldfiqqaisyssf
pfwmglsrrnpsypwlwedgsplmphlfrvrgavsqtypsgtcayiqrgavyaencilaa
fsicqkkanlra

    Sequence, based on observed residues (ATOM records): (download) 
    >1ypoE (E:)
apcpqdwiwhgencylfssgsfnweksqekclsldakllkinstadldfiqqaisyssfp
fwmglsrrnpsypwlwedgsplmphlfrvrgavsqtypsgtcayiqrgavyaencilaaf
sicqkkanl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1ypoF (F:)
mapcpqdwiwhgencylfssgsfnweksqekclsldakllkinstadldfiqqaisyssf
pfwmglsrrnpsypwlwedgsplmphlfrvrgavsqtypsgtcayiqrgavyaencilaa
fsicqkkanlra

    Sequence, based on observed residues (ATOM records): (download) 
    >1ypoF (F:)
mapcpqdwiwhgencylfssgsfnweksqekclsldakllkinstadldfiqqaisyssf
pfwmglsrrnpsypwlwedgsplmphlfrvrgavsqtypsgtcayiqrgavyaencilaa
fsicqkkanl

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ypoG (G:)
mapcpqdwiwhgencylfssgsfnweksqekclsldakllkinstadldfiqqaisyssf
pfwmglsrrnpsypwlwedgsplmphlfrvrgavsqtypsgtcayiqrgavyaencilaa
fsicqkkanlra

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1ypoH (H:)
mapcpqdwiwhgencylfssgsfnweksqekclsldakllkinstadldfiqqaisyssf
pfwmglsrrnpsypwlwedgsplmphlfrvrgavsqtypsgtcayiqrgavyaencilaa
fsicqkkanlra

    Sequence, based on observed residues (ATOM records): (download) 
    >1ypoH (H:)
apcpqdwiwhgencylfssgsfnweksqekclsldakllkinstadldfiqqaisyssfp
fwmglsrrnpsypwlwedgsplmphlfrvrgavsqtypsgtcayiqrgavyaencilaaf
sicqkkanl