PDB entry 1yp6

View 1yp6 on RCSB PDB site
Description: Van der Waals Interactions Dominate Hydrophobic Association in a Protein Binding Site Occluded From Solvent Water
Class: ligand binding protein
Keywords: lipocalin; beta-barrel; mup1; 2-methoxy-3-isobutylpyrazine, ligand binding protein
Deposited on 2005-01-30, released 2005-08-30
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.193
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: major urinary protein 1
    Species: Mus musculus [TaxId:10090]
    Gene: MUP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11588 (12-End)
      • engineered (61)
      • engineered (131)
      • engineered (151)
    Domains in SCOPe 2.07: d1yp6a1
  • Heterogens: CD, CL, PRZ, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1yp6A (A:)
    mrgshhhhhhgseeasstgrnfnvekingewhtiilasdkrekiedngnfrlfleqihvl
    ekslvlkfhtvrdeecselsmvadktekageysvtydgfntftipktdydnflmahline
    kdgetfqlmglfgrepdlssdikerfaqlceehgilreniidlsnanrclqare
    

    Sequence, based on observed residues (ATOM records): (download)
    >1yp6A (A:)
    eeasstgrnfnvekingewhtiilasdkrekiedngnfrlfleqihvlekslvlkfhtvr
    deecselsmvadktekageysvtydgfntftipktdydnflmahlinekdgetfqlmglf
    grepdlssdikerfaqlceehgilreniidlsnanrc