PDB entry 1yj1

View 1yj1 on RCSB PDB site
Description: X-ray Crystal Structure of a Chemically Synthesized [D-Gln35]Ubiquitin
Class: structural protein
Keywords: Ubiquitin, STRUCTURAL PROTEIN
Deposited on 2005-01-13, released 2005-06-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.3 Å
R-factor: 0.196
AEROSPACI score: 0.74 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • GB AAH14880 (0-End)
      • engineered (0)
      • modified residue (34)
    Domains in SCOPe 2.08: d1yj1a1, d1yj1a2
  • Chain 'B':
    Compound: Ubiquitin
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • GB AAH14880 (0-End)
      • engineered (0)
      • modified residue (34)
    Domains in SCOPe 2.08: d1yj1b1, d1yj1b2
  • Chain 'C':
    Compound: Ubiquitin
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • GB AAH14880 (0-End)
      • engineered (0)
      • modified residue (34)
    Domains in SCOPe 2.08: d1yj1c1, d1yj1c2
  • Heterogens: CD, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1yj1A (A:)
lqifvktltgktitlevepsdtienvkakiqdkeqippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1yj1A (A:)
lqifvktltgktitlevepsdtienvkakiqdkeqippdqqrlifagkqledgrtlsdyn
iqkestlhlvl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1yj1B (B:)
lqifvktltgktitlevepsdtienvkakiqdkeqippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1yj1B (B:)
lqifvktltgktitlevepsdtienvkakiqdkeqippdqqrlifagkqledgrtlsdyn
iqkestlhlvlr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1yj1C (C:)
lqifvktltgktitlevepsdtienvkakiqdkeqippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1yj1C (C:)
lqifvktltgktitlevepsdtienvkakiqdkeqippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlr