PDB entry 1yif

View 1yif on RCSB PDB site
Description: CRYSTAL STRUCTURE OF beta-1,4-xylosidase FROM BACILLUS SUBTILIS, NEW YORK STRUCTURAL GENOMICS CONSORTIUM
Class: hydrolase
Keywords: GLYCOSIDASE, XYLAN, XYLOSIDASE, STRUCTURAL GENOMICS, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, HYDROLASE
Deposited on 2005-01-11, released 2005-01-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-11, with a file datestamp of 2017-10-06.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: beta-1,4-xylosidase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: xynB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yifa1, d1yifa2
  • Chain 'B':
    Compound: beta-1,4-xylosidase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: xynB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yifb1, d1yifb2
  • Chain 'C':
    Compound: beta-1,4-xylosidase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: xynB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yifc1, d1yifc2
  • Chain 'D':
    Compound: beta-1,4-xylosidase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: xynB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yifd1, d1yifd2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1yifA (A:)
mkitnpvlkgfnpdpsicragedyyiavstfewfpgvqihhskdlvnwhlvahplqrvsq
ldmkgnpnsggvwapclsysdgkfwliytdvkvvdgawkdchnylvtcetingdwsepik
lnssgfdaslfhdtdgkkyllnmlwdhridrhsfggiviqeysdkeqkligkpkvifegt
drklteaphlyhignyyylltaeggtryehaatiarsaniegpyevhpdnpiltswhdpg
nplqkcghasivqthtdewylahltgrpihpdddsifqqrgycplgretaiqklywkdew
pyvvggkegslevdapsipetifeatypevdefedstlninfqtlripftnelgsltqap
nhlrlfghesltstftqafvarrwqslhfeaetavefypenfqqaaglvnyyntenwtal
qvthdeelgrilelticdnfsfsqplnnkiviprevkyvylrvniekdkyyyfysfnked
whkidialeskklsddyirgggfftgafvgmqcqdtggnhipadfryfrykek

    Sequence, based on observed residues (ATOM records): (download) 
    >1yifA (A:)
kitnpvlkgfnpdpsicragedyyiavstfewfpgvqihhskdlvnwhlvahplqrvsql
dmkgnpnsggvwapclsysdgkfwliytdvkvvdgawkdchnylvtcetingdwsepikl
nssgfdaslfhdtdgkkyllnmlwdhridrhsfggiviqeysdkeqkligkpkvifegtd
rklteaphlyhignyyylltaeggtryehaatiarsaniegpyevhpdnpiltswhdpgn
plqkcghasivqthtdewylahltgrpihpdddsifqqrgycplgretaiqklywkdewp
yvvggkegslevdapsipetifeatypevdefedstlninfqtlripftnelgsltqapn
hlrlfghesltstftqafvarrwqslhfeaetavefypenfqqaaglvnyyntenwtalq
vthdeelgrilelticdnfsfsqplnnkiviprevkyvylrvniekdkyyyfysfnkedw
hkidialeskklsddyirgggfftgafvgmqcqdtggnhipadfryfrykek

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1yifB (B:)
mkitnpvlkgfnpdpsicragedyyiavstfewfpgvqihhskdlvnwhlvahplqrvsq
ldmkgnpnsggvwapclsysdgkfwliytdvkvvdgawkdchnylvtcetingdwsepik
lnssgfdaslfhdtdgkkyllnmlwdhridrhsfggiviqeysdkeqkligkpkvifegt
drklteaphlyhignyyylltaeggtryehaatiarsaniegpyevhpdnpiltswhdpg
nplqkcghasivqthtdewylahltgrpihpdddsifqqrgycplgretaiqklywkdew
pyvvggkegslevdapsipetifeatypevdefedstlninfqtlripftnelgsltqap
nhlrlfghesltstftqafvarrwqslhfeaetavefypenfqqaaglvnyyntenwtal
qvthdeelgrilelticdnfsfsqplnnkiviprevkyvylrvniekdkyyyfysfnked
whkidialeskklsddyirgggfftgafvgmqcqdtggnhipadfryfrykek

    Sequence, based on observed residues (ATOM records): (download) 
    >1yifB (B:)
kitnpvlkgfnpdpsicragedyyiavstfewfpgvqihhskdlvnwhlvahplqrvsql
dmkgnpnsggvwapclsysdgkfwliytdvkvvdgawkdchnylvtcetingdwsepikl
nssgfdaslfhdtdgkkyllnmlwdhridrhsfggiviqeysdkeqkligkpkvifegtd
rklteaphlyhignyyylltaeggtryehaatiarsaniegpyevhpdnpiltswhdpgn
plqkcghasivqthtdewylahltgrpihpdddsifqqrgycplgretaiqklywkdewp
yvvggkegslevdapsipetifeatypevdefedstlninfqtlripftnelgsltqapn
hlrlfghesltstftqafvarrwqslhfeaetavefypenfqqaaglvnyyntenwtalq
vthdeelgrilelticdnfsfsqplnnkiviprevkyvylrvniekdkyyyfysfnkedw
hkidialeskklsddyirgggfftgafvgmqcqdtggnhipadfryfrykek

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1yifC (C:)
mkitnpvlkgfnpdpsicragedyyiavstfewfpgvqihhskdlvnwhlvahplqrvsq
ldmkgnpnsggvwapclsysdgkfwliytdvkvvdgawkdchnylvtcetingdwsepik
lnssgfdaslfhdtdgkkyllnmlwdhridrhsfggiviqeysdkeqkligkpkvifegt
drklteaphlyhignyyylltaeggtryehaatiarsaniegpyevhpdnpiltswhdpg
nplqkcghasivqthtdewylahltgrpihpdddsifqqrgycplgretaiqklywkdew
pyvvggkegslevdapsipetifeatypevdefedstlninfqtlripftnelgsltqap
nhlrlfghesltstftqafvarrwqslhfeaetavefypenfqqaaglvnyyntenwtal
qvthdeelgrilelticdnfsfsqplnnkiviprevkyvylrvniekdkyyyfysfnked
whkidialeskklsddyirgggfftgafvgmqcqdtggnhipadfryfrykek

    Sequence, based on observed residues (ATOM records): (download) 
    >1yifC (C:)
kitnpvlkgfnpdpsicragedyyiavstfewfpgvqihhskdlvnwhlvahplqrvsql
dmkgnpnsggvwapclsysdgkfwliytdvkvvdgawkdchnylvtcetingdwsepikl
nssgfdaslfhdtdgkkyllnmlwdhridrhsfggiviqeysdkeqkligkpkvifegtd
rklteaphlyhignyyylltaeggtryehaatiarsaniegpyevhpdnpiltswhdpgn
plqkcghasivqthtdewylahltgrpihpdddsifqqrgycplgretaiqklywkdewp
yvvggkegslevdapsipetifeatypevdefedstlninfqtlripftnelgsltqapn
hlrlfghesltstftqafvarrwqslhfeaetavefypenfqqaaglvnyyntenwtalq
vthdeelgrilelticdnfsfsqplnnkiviprevkyvylrvniekdkyyyfysfnkedw
hkidialeskklsddyirgggfftgafvgmqcqdtggnhipadfryfrykek

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1yifD (D:)
mkitnpvlkgfnpdpsicragedyyiavstfewfpgvqihhskdlvnwhlvahplqrvsq
ldmkgnpnsggvwapclsysdgkfwliytdvkvvdgawkdchnylvtcetingdwsepik
lnssgfdaslfhdtdgkkyllnmlwdhridrhsfggiviqeysdkeqkligkpkvifegt
drklteaphlyhignyyylltaeggtryehaatiarsaniegpyevhpdnpiltswhdpg
nplqkcghasivqthtdewylahltgrpihpdddsifqqrgycplgretaiqklywkdew
pyvvggkegslevdapsipetifeatypevdefedstlninfqtlripftnelgsltqap
nhlrlfghesltstftqafvarrwqslhfeaetavefypenfqqaaglvnyyntenwtal
qvthdeelgrilelticdnfsfsqplnnkiviprevkyvylrvniekdkyyyfysfnked
whkidialeskklsddyirgggfftgafvgmqcqdtggnhipadfryfrykek

    Sequence, based on observed residues (ATOM records): (download) 
    >1yifD (D:)
kitnpvlkgfnpdpsicragedyyiavstfewfpgvqihhskdlvnwhlvahplqrvsql
dmkgnpnsggvwapclsysdgkfwliytdvkvvdgawkdchnylvtcetingdwsepikl
nssgfdaslfhdtdgkkyllnmlwdhridrhsfggiviqeysdkeqkligkpkvifegtd
rklteaphlyhignyyylltaeggtryehaatiarsaniegpyevhpdnpiltswhdpgn
plqkcghasivqthtdewylahltgrpihpdddsifqqrgycplgretaiqklywkdewp
yvvggkegslevdapsipetifeatypevdefedstlninfqtlripftnelgsltqapn
hlrlfghesltstftqafvarrwqslhfeaetavefypenfqqaaglvnyyntenwtalq
vthdeelgrilelticdnfsfsqplnnkiviprevkyvylrvniekdkyyyfysfnkedw
hkidialeskklsddyirgggfftgafvgmqcqdtggnhipadfryfrykek