PDB entry 1ygz

View 1ygz on RCSB PDB site
Description: Crystal Structure of Inorganic Pyrophosphatase from Helicobacter pylori
Class: hydrolase
Keywords: hydrolase
Deposited on 2005-01-06, released 2005-11-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.206
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: inorganic pyrophosphatase
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56153 (0-End)
      • modified residue (0)
      • modified residue (38)
      • modified residue (93)
      • modified residue (99)
    Domains in SCOPe 2.07: d1ygza_
  • Chain 'B':
    Compound: inorganic pyrophosphatase
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56153 (0-End)
      • modified residue (0)
      • modified residue (38)
      • modified residue (93)
      • modified residue (99)
    Domains in SCOPe 2.07: d1ygzb_
  • Chain 'C':
    Compound: inorganic pyrophosphatase
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56153 (0-End)
      • modified residue (0)
      • modified residue (38)
      • modified residue (93)
      • modified residue (99)
    Domains in SCOPe 2.07: d1ygzc_
  • Chain 'D':
    Compound: inorganic pyrophosphatase
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56153 (0-End)
      • modified residue (0)
      • modified residue (38)
      • modified residue (93)
      • modified residue (99)
    Domains in SCOPe 2.07: d1ygzd_
  • Chain 'E':
    Compound: inorganic pyrophosphatase
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56153 (0-End)
      • modified residue (0)
      • modified residue (38)
      • modified residue (93)
      • modified residue (99)
    Domains in SCOPe 2.07: d1ygze_
  • Chain 'F':
    Compound: inorganic pyrophosphatase
    Species: HELICOBACTER PYLORI [TaxId:85962]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56153 (0-End)
      • modified residue (0)
      • modified residue (38)
      • modified residue (93)
      • modified residue (99)
    Domains in SCOPe 2.07: d1ygzf_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ygzA (A:)
mnleklevshdadslcvvieiskhsnikyeldkesgalmvdrvlygaqnypanygfvpnt
lgsdgdpvdalvlsdvafqagsvvkarlvgvlnmedesgmdeklialpidkidpthsyvk
diddlskhtldkikhffetykdlepnkwvkvkgfenkesaikvlekaikayqg

    Sequence, based on observed residues (ATOM records): (download) 
    >1ygzA (A:)
mnleklevshdadslcvvieiskhsnikyeldkesgalmvdrvlygaqnypanygfvpnt
lgsdgdpvdalvlsdvafqagsvvkarlvgvlnmedesgmdeklialpidkidpthsyvk
diddlskhtldkikhffetykdlepnkwvkvkgfenkesaikvlekaikayq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ygzB (B:)
mnleklevshdadslcvvieiskhsnikyeldkesgalmvdrvlygaqnypanygfvpnt
lgsdgdpvdalvlsdvafqagsvvkarlvgvlnmedesgmdeklialpidkidpthsyvk
diddlskhtldkikhffetykdlepnkwvkvkgfenkesaikvlekaikayqg

    Sequence, based on observed residues (ATOM records): (download) 
    >1ygzB (B:)
mnleklevshdadslcvvieiskhsnikyeldkesgalmvdrvlygaqnypanygfvpnt
lgsdgdpvdalvlsdvafqagsvvkarlvgvlnmedesgmdeklialpidkidpthsyvk
diddlskhtldkikhffetykdlepnkwvkvkgfenkesaikvlekaikayq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1ygzC (C:)
mnleklevshdadslcvvieiskhsnikyeldkesgalmvdrvlygaqnypanygfvpnt
lgsdgdpvdalvlsdvafqagsvvkarlvgvlnmedesgmdeklialpidkidpthsyvk
diddlskhtldkikhffetykdlepnkwvkvkgfenkesaikvlekaikayqg

    Sequence, based on observed residues (ATOM records): (download) 
    >1ygzC (C:)
mnleklevshdadslcvvieiskhsnikyeldkesgalmvdrvlygaqnypanygfvpnt
lgsdgdpvdalvlsdvafqagsvvkarlvgvlnmedesgmdeklialpidkidpthsyvk
diddlskhtldkikhffetykdlepnkwvkvkgfenkesaikvlekaikayq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1ygzD (D:)
mnleklevshdadslcvvieiskhsnikyeldkesgalmvdrvlygaqnypanygfvpnt
lgsdgdpvdalvlsdvafqagsvvkarlvgvlnmedesgmdeklialpidkidpthsyvk
diddlskhtldkikhffetykdlepnkwvkvkgfenkesaikvlekaikayqg

    Sequence, based on observed residues (ATOM records): (download) 
    >1ygzD (D:)
mnleklevshdadslcvvieiskhsnikyeldkesgalmvdrvlygaqnypanygfvpnt
lgsdgdpvdalvlsdvafqagsvvkarlvgvlnmedesgmdeklialpidkidpthsyvk
diddlskhtldkikhffetykdlepnkwvkvkgfenkesaikvlekaikayq

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1ygzE (E:)
mnleklevshdadslcvvieiskhsnikyeldkesgalmvdrvlygaqnypanygfvpnt
lgsdgdpvdalvlsdvafqagsvvkarlvgvlnmedesgmdeklialpidkidpthsyvk
diddlskhtldkikhffetykdlepnkwvkvkgfenkesaikvlekaikayqg

    Sequence, based on observed residues (ATOM records): (download) 
    >1ygzE (E:)
mnleklevshdadslcvvieiskhsnikyeldkesgalmvdrvlygaqnypanygfvpnt
lgsdgdpvdalvlsdvafqagsvvkarlvgvlnmedesgmdeklialpidkidpthsyvk
diddlskhtldkikhffetykdlepnkwvkvkgfenkesaikvlekaikayq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1ygzF (F:)
mnleklevshdadslcvvieiskhsnikyeldkesgalmvdrvlygaqnypanygfvpnt
lgsdgdpvdalvlsdvafqagsvvkarlvgvlnmedesgmdeklialpidkidpthsyvk
diddlskhtldkikhffetykdlepnkwvkvkgfenkesaikvlekaikayqg

    Sequence, based on observed residues (ATOM records): (download) 
    >1ygzF (F:)
mnleklevshdadslcvvieiskhsnikyeldkesgalmvdrvlygaqnypanygfvpnt
lgsdgdpvdalvlsdvafqagsvvkarlvgvlnmedesgmdeklialpidkidpthsyvk
diddlskhtldkikhffetykdlepnkwvkvkgfenkesaikvlekaikayq