PDB entry 1ygy

View 1ygy on RCSB PDB site
Description: Crystal Structure of D-3-Phosphoglycerate dehydrogenase From Mycobacterium tuberculosis
Class: Oxidoreductase
Keywords: Oxidoreductase, Phosphoglycerate dehydrogenase, serine biosynthesis, Structural Genomics, PSI, Protein Structure Initiative, TB Structural Genomics Consortium, TBSGC
Deposited on 2005-01-05, released 2005-01-25
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.207
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-3-phosphoglycerate dehydrogenase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: serA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1ygya1, d1ygya2, d1ygya3, d1ygya4
  • Chain 'B':
    Compound: D-3-phosphoglycerate dehydrogenase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: serA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1ygyb1, d1ygyb2, d1ygyb3, d1ygyb4
  • Heterogens: TAR, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ygyA (A:)
mvslpvvliadklapstvaalgdqvevrwvdgpdrdkllaavpeadallvrsattvdaev
laaapklkivaragvgldnvdvdaatargvlvvnaptsnihsaaehalalllaasrqipa
adaslrehtwkrssfsgteifgktvgvvglgrigqlvaqriaafgayvvaydpyvspara
aqlgiellslddllaradfisvhlpktpetaglidkealaktkpgviivnaargglvdea
aladaitgghvraagldvfatepctdsplfelaqvvvtphlgastaeaqdragtdvaesv
rlalagefvpdavnvgggvvneevapwldlvrklgvlagvlsdelpvslsvqvrgelaae
evevlrlsalrglfsaviedavtfvnapalaaergvtaeickasespnhrsvvdvravga
dgsvvtvsgtlygpqlsqkivqingrhfdlraqginliihyvdrpgalgkigtllgtagv
niqaaqlsedaegpgatillrldqdvpddvrtaiaaavdayklevvdls

    Sequence, based on observed residues (ATOM records): (download) 
    >1ygyA (A:)
slpvvliadklapstvaalgdqvevrwvdgpdrdkllaavpeadallvrsattvdaevla
aapklkivaragvgldnvdvdaatargvlvvnaptsnihsaaehalalllaasrqipaad
aslrehtwkrssfsgteifgktvgvvglgrigqlvaqriaafgayvvaydpyvsparaaq
lgiellslddllaradfisvhlpktpetaglidkealaktkpgviivnaargglvdeaal
adaitgghvraagldvfatepctdsplfelaqvvvtphlgastaeaqdragtdvaesvrl
alagefvpdavnvgggvvneevapwldlvrklgvlagvlsdelpvslsvqvrgelaaeev
evlrlsalrglfsaviedavtfvnapalaaergvtaeickasespnhrsvvdvravgadg
svvtvsgtlygpqlsqkivqingrhfdlraqginliihyvdrpgalgkigtllgtagvni
qaaqlsedaegpgatillrldqdvpddvrtaiaaavdayklevvdls

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ygyB (B:)
mvslpvvliadklapstvaalgdqvevrwvdgpdrdkllaavpeadallvrsattvdaev
laaapklkivaragvgldnvdvdaatargvlvvnaptsnihsaaehalalllaasrqipa
adaslrehtwkrssfsgteifgktvgvvglgrigqlvaqriaafgayvvaydpyvspara
aqlgiellslddllaradfisvhlpktpetaglidkealaktkpgviivnaargglvdea
aladaitgghvraagldvfatepctdsplfelaqvvvtphlgastaeaqdragtdvaesv
rlalagefvpdavnvgggvvneevapwldlvrklgvlagvlsdelpvslsvqvrgelaae
evevlrlsalrglfsaviedavtfvnapalaaergvtaeickasespnhrsvvdvravga
dgsvvtvsgtlygpqlsqkivqingrhfdlraqginliihyvdrpgalgkigtllgtagv
niqaaqlsedaegpgatillrldqdvpddvrtaiaaavdayklevvdls

    Sequence, based on observed residues (ATOM records): (download) 
    >1ygyB (B:)
slpvvliadklapstvaalgdqvevrwvdgpdrdkllaavpeadallvrsattvdaevla
aapklkivaragvgldnvdvdaatargvlvvnaptsnihsaaehalalllaasrqipaad
aslrehtwkrssfsgteifgktvgvvglgrigqlvaqriaafgayvvaydpyvsparaaq
lgiellslddllaradfisvhlpktpetaglidkealaktkpgviivnaargglvdeaal
adaitgghvraagldvfatepctdsplfelaqvvvtphlgastaeaqdragtdvaesvrl
alagefvpdavnvgggvvneevapwldlvrklgvlagvlsdelpvslsvqvrgelaaeev
evlrlsalrglfsaviedavtfvnapalaaergvtaeickasespnhrsvvdvravgadg
svvtvsgtlygpqlsqkivqingrhfdlraqginliihyvdrpgalgkigtllgtagvni
qaaqlsedaegpgatillrldqdvpddvrtaiaaavdayklevvdls