PDB entry 1yf3

View 1yf3 on RCSB PDB site
Description: T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) Contact
Class: Transferase/DNA
Keywords: T4DAM, METHYLTRANSFERASE, DNA, Transferase-DNA COMPLEX
Deposited on 2004-12-30, released 2005-05-17
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.29 Å
R-factor: 0.214
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA adenine methylase
    Species: Enterobacteria phage T4 sensu lato [TaxId:10665]
    Gene: dam
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04392 (0-258)
      • see remark 999 (118)
      • see remark 999 (138-139)
      • see remark 999 (208)
    Domains in SCOPe 2.06: d1yf3a1
  • Chain 'B':
    Compound: DNA adenine methylase
    Species: Enterobacteria phage T4 sensu lato [TaxId:10665]
    Gene: dam
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04392 (0-258)
      • see remark 999 (118)
      • see remark 999 (138-139)
      • see remark 999 (208)
    Domains in SCOPe 2.06: d1yf3b_
  • Chain 'C':
    Compound: 5'-d(*ap*cp*cp*ap*tp*gp*ap*tp*cp*tp*gp*ap*c)-3'
    Species: synthetic, synthetic
  • Chain 'D':
    Compound: 5'-d(*tp*gp*tp*cp*ap*gp*ap*tp*cp*ap*tp*gp*g)-3'
    Species: synthetic, synthetic
  • Heterogens: SAH, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1yf3A (A:)
mlgaiaytgnkqsllpelkshfpkynrfvdlfcgglsvslnvngpvlandiqepiiemyk
rlinvswddvlkvikqyklsktskeeflklredynktrdplllyvlhfhgfsnmirinyk
gnfttpfgkrtinknsekrfnhfkqncdkiifsslhfkdvkildgdfvyvdppylitvad
ynkfwsedeekdllnlldslndrgikfglsnvlehhgkentllkewskkynvkhlnkkyv
fniyhskekngtdevyifn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1yf3B (B:)
mlgaiaytgnkqsllpelkshfpkynrfvdlfcgglsvslnvngpvlandiqepiiemyk
rlinvswddvlkvikqyklsktskeeflklredynktrdplllyvlhfhgfsnmirinyk
gnfttpfgkrtinknsekrfnhfkqncdkiifsslhfkdvkildgdfvyvdppylitvad
ynkfwsedeekdllnlldslndrgikfglsnvlehhgkentllkewskkynvkhlnkkyv
fniyhskekngtdevyifn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yf3B (B:)
mlgaiaytgnkqsllpelkshfpkynrfvdlfcgglsvslnvngpvlandiqepiiemyk
rlinvswddvlkvikqyklsktskeeflklredynktrdplllyvlhfhgfsnmirinyk
gnfttpfgkrtinknsekrfnhfkqncdkiifsslhfkdvkildgdfvyvdppylitvad
ynkfwsedeekdllnlldslndrgikfglsnvlehhgkentllkewskkynvkhlnkkkn
gtdevyifn

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.