PDB entry 1xd5

View 1xd5 on RCSB PDB site
Description: Crystal structures of novel monomeric monocot mannose-binding lectins from Gastrodia elata
Class: antifungal protein
Keywords: monocot mannose binding lectin, monomer, homogeneous beta-sheet, antifungal protein
Deposited on 2004-09-04, released 2005-01-11
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.167
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: antifungal protein GAFP-1
    Species: Gastrodia elata [TaxId:91201]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1xd5a_
  • Chain 'B':
    Compound: antifungal protein GAFP-1
    Species: Gastrodia elata [TaxId:91201]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1xd5b_
  • Chain 'C':
    Compound: antifungal protein GAFP-1
    Species: Gastrodia elata [TaxId:91201]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1xd5c_
  • Chain 'D':
    Compound: antifungal protein GAFP-1
    Species: Gastrodia elata [TaxId:91201]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1xd5d_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1xd5A (A:)
sdrlnsghqldtggslaeggylfiiqndcnlvlydnnravwasgtngkasgcvlkmqndg
nlviysgsraiwasntnrqngnyylilqrdrnvviydnsnnaiwathtnvgn

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1xd5B (B:)
sdrlnsghqldtggslaeggylfiiqndcnlvlydnnravwasgtngkasgcvlkmqndg
nlviysgsraiwasntnrqngnyylilqrdrnvviydnsnnaiwathtnvgn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1xd5C (C:)
sdrlnsghqldtggslaeggylfiiqndcnlvlydnnravwasgtngkasgcvlkmqndg
nlviysgsraiwasntnrqngnyylilqrdrnvviydnsnnaiwathtnvgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1xd5C (C:)
sdrlnsghqldtggslaeggylfiiqndcnlvlydnnravwasgtngkasgcvlkmqndg
nlviysgsraiwasntnrqngnyylilqrdrnvviydnsnnaiwathtnvg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1xd5D (D:)
sdrlnsghqldtggslaeggylfiiqndcnlvlydnnravwasgtngkasgcvlkmqndg
nlviysgsraiwasntnrqngnyylilqrdrnvviydnsnnaiwathtnvgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1xd5D (D:)
sdrlnsghqldtggslaeggylfiiqndcnlvlydnnravwasgtngkasgcvlkmqndg
nlviysgsraiwasntnrqngnyylilqrdrnvviydnsnnaiwathtnv