PDB entry 1woi

View 1woi on RCSB PDB site
Description: Crystal Structure of Agmatinase Reveals Structural Conservation and Inhibition Mechanism of the Ureohydrolase Superfamily
Class: hydrolase
Keywords: alpha/beta fold, HYDROLASE
Deposited on 2004-08-18, released 2004-09-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: 0.21
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: agmatinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RZ04 (Start-303)
      • cloning artifact (304)
    Domains in SCOPe 2.07: d1woia1, d1woia2
  • Chain 'B':
    Compound: agmatinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RZ04 (Start-303)
      • cloning artifact (304)
    Domains in SCOPe 2.07: d1woib1, d1woib2
  • Chain 'C':
    Compound: agmatinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RZ04 (Start-303)
      • cloning artifact (304)
    Domains in SCOPe 2.07: d1woic1, d1woic2
  • Chain 'D':
    Compound: agmatinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RZ04 (Start-303)
      • cloning artifact (304)
    Domains in SCOPe 2.07: d1woid1, d1woid2
  • Chain 'E':
    Compound: agmatinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RZ04 (Start-303)
      • cloning artifact (304)
    Domains in SCOPe 2.07: d1woie1, d1woie2
  • Chain 'F':
    Compound: agmatinase
    Species: Deinococcus radiodurans [TaxId:1299]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RZ04 (Start-303)
      • cloning artifact (304)
    Domains in SCOPe 2.07: d1woif1, d1woif2
  • Heterogens: MN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1woiA (A:)
msgpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreasl
rsvppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggd
hsvsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvg
lrglrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipg
tsspepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcev
fdhvl

    Sequence, based on observed residues (ATOM records): (download) 
    >1woiA (A:)
gpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreaslrs
vppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggdhs
vsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvglr
glrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipgts
spepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcevfd
hvl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1woiB (B:)
msgpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreasl
rsvppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggd
hsvsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvg
lrglrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipg
tsspepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcev
fdhvl

    Sequence, based on observed residues (ATOM records): (download) 
    >1woiB (B:)
gpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreaslrs
vppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggdhs
vsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvglr
glrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipgts
spepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcevfd
hvl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1woiC (C:)
msgpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreasl
rsvppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggd
hsvsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvg
lrglrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipg
tsspepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcev
fdhvl

    Sequence, based on observed residues (ATOM records): (download) 
    >1woiC (C:)
gpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreaslrs
vppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggdhs
vsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvglr
glrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipgts
spepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcevfd
hvl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1woiD (D:)
msgpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreasl
rsvppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggd
hsvsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvg
lrglrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipg
tsspepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcev
fdhvl

    Sequence, based on observed residues (ATOM records): (download) 
    >1woiD (D:)
gpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreaslrs
vppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggdhs
vsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvglr
glrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipgts
spepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcevfd
hvl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1woiE (E:)
msgpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreasl
rsvppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggd
hsvsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvg
lrglrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipg
tsspepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcev
fdhvl

    Sequence, based on observed residues (ATOM records): (download) 
    >1woiE (E:)
gpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreaslrs
vppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggdhs
vsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvglr
glrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipgts
spepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcevfd
hvl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1woiF (F:)
msgpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreasl
rsvppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggd
hsvsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvg
lrglrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipg
tsspepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcev
fdhvl

    Sequence, based on observed residues (ATOM records): (download) 
    >1woiF (F:)
gpahlpyggiptfaraplvqpdgdwqadvaalgvpfdialgfrpgarfapralreaslrs
vppftgldgktrlqgvtfadagdvilpslepqlahdriteaarqvrgrcrvpvflggdhs
vsypllrafadvpdlhvvqldahldftdtrndtkwsnsspfrracealpnlvhittvglr
glrfdpeavaaararghtiipmddvtadlagvlaqlprgqnvyfsvdvdgfdpavipgts
spepdgltyaqgmkilaaaaanntvvgldlvelapnldptgrsellmarlvmetlcevfd
hvl