PDB entry 1w39

View 1w39 on RCSB PDB site
Description: crystal structure of an artificial top component of turnip yellow mosaic virus
Class: Virus
Keywords: ARTIFICIAL TOP COMPONENT, CAPSID PROTEIN, TYMV, VIRUS, CRYSTALLOGRAPHY, VIRUS/VIRAL PROTEIN, Icosahedral virus
Deposited on 2004-07-14, released 2004-08-16
The last revision prior to the SCOP 1.73 freeze date was dated 2005-05-26, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.75 Å
R-factor: 0.2453
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: turnip yellow mosaic virus empty capsid
    Species: TURNIP YELLOW MOSAIC VIRUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1w39a_
  • Chain 'B':
    Compound: turnip yellow mosaic virus empty capsid
    Species: TURNIP YELLOW MOSAIC VIRUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1w39b_
  • Chain 'C':
    Compound: turnip yellow mosaic virus empty capsid
    Species: TURNIP YELLOW MOSAIC VIRUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1w39c_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1w39A (A:)
meidkelapqdrtvtvatvlpavpgpspltikqpfqsevlfagtkdaeasltianidsvs
tlttfyrhasleslwvtihptlqaptfpttvgvcwvpaqspvtpaqitktyggqifcigg
aiqtlsplivkcplemmqprvkdsiqyldspkllisitaqptappastciitvsgtlsmh
splitdtst

    Sequence, based on observed residues (ATOM records): (download) 
    >1w39A (A:)
qdrtvtspltikqpfqsevlfagtkdaeasltianidsvstlttfyrhasleslwvtihp
tlqaptfpttvgvcwvpaqspvtpaqitktyggqifciggaiqtlsplivkcplemmqpr
vkdsiqyldspkllisitaqptappastciitvsgtlsmhsplitdtst

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w39B (B:)
meidkelapqdrtvtvatvlpavpgpspltikqpfqsevlfagtkdaeasltianidsvs
tlttfyrhasleslwvtihptlqaptfpttvgvcwvpaqspvtpaqitktyggqifcigg
aiqtlsplivkcplemmqprvkdsiqyldspkllisitaqptappastciitvsgtlsmh
splitdtst

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1w39C (C:)
meidkelapqdrtvtvatvlpavpgpspltikqpfqsevlfagtkdaeasltianidsvs
tlttfyrhasleslwvtihptlqaptfpttvgvcwvpaqspvtpaqitktyggqifcigg
aiqtlsplivkcplemmqprvkdsiqyldspkllisitaqptappastciitvsgtlsmh
splitdtst