PDB entry 1vyb
View 1vyb on RCSB PDB site
Description: endonuclease domain of human line1 orf2p
Class: transferase
Keywords: endonuclease, ape-1 type, retrotransposition, retrotransposon, transferase, RNA-directed DNA polymerase
Deposited on
2004-04-25, released
2004-06-04
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.188
AEROSPACI score: 0.51
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: orf2 contains a reverse transcriptase domain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d1vyba_ - Chain 'B':
Compound: orf2 contains a reverse transcriptase domain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d1vybb_ - Heterogens: SO4, SO3, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1vybA (A:)
mtgsnshitiltlninglnsaikrhrlaswiksqdpsvcciqethltcrdthrlkikgwr
kiyqangkqkkagvailvsdktdfkptkikrdkeghyimvkgsiqqeeltilniyapntg
aprfikqvlsdlqrdldshtlimgdfntplstldrstrqkvnkdtqelnsalhqadlidi
yrtlhpksteytffsaphhtyskidhivgskallskckrteiitnylsdhsaiklelr
Sequence, based on observed residues (ATOM records): (download)
>1vybA (A:)
gsnshitiltlninglnsaikrhrlaswiksqdpsvcciqethltcrdthrlkikgwrki
yqangkqkkagvailvsdktdfkptkikrdkeghyimvkgsiqqeeltilniyapntgap
rfikqvlsdlqrdldshtlimgdfntplstldrstrqkvnkdtqelnsalhqadlidiyr
tlhpksteytffsaphhtyskidhivgskallskckrteiitnylsdhsaiklelr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1vybB (B:)
mtgsnshitiltlninglnsaikrhrlaswiksqdpsvcciqethltcrdthrlkikgwr
kiyqangkqkkagvailvsdktdfkptkikrdkeghyimvkgsiqqeeltilniyapntg
aprfikqvlsdlqrdldshtlimgdfntplstldrstrqkvnkdtqelnsalhqadlidi
yrtlhpksteytffsaphhtyskidhivgskallskckrteiitnylsdhsaiklelr
Sequence, based on observed residues (ATOM records): (download)
>1vybB (B:)
shitiltlninglnsaikrhrlaswiksqdpsvcciqethltcrdthrlkikgwrkiyqa
ngkqkkagvailvsdktdfkptkikrdkeghyimvkgsiqqeeltilniyapntgaprfi
kqvlsdlqrdldshtlimgdfntplstldrstrqkvnkdtqelnsalhqadlidiyrtlh
pksteytffsaphhtyskidhivgskallskckrteiitnylsdhsaiklelr