PDB entry 1vkx
View 1vkx on RCSB PDB site
Description: crystal structure of the nfkb p50/p65 heterodimer complexed to the immunoglobulin kb DNA
Class: transcription/DNA
Keywords: transcription factor, nf-kb, heterodimer, DNA-binding, transcription/DNA complex
Deposited on
1997-09-17, released
1998-12-09
The last revision prior to the SCOPe 2.07 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.208
AEROSPACI score: 0.18
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: protein (nf-kappa b p65 subunit)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1vkxa1, d1vkxa2 - Chain 'B':
Compound: protein (nf-kappa b p50 subunit)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1vkxb1, d1vkxb2 - Chain 'C':
Compound: DNA (5'-d(*tp*gp*gp*gp*gp*ap*cp*tp*tp*tp*cp*c)-3')
- Chain 'D':
Compound: DNA (5'-d(*ap*gp*gp*ap*ap*ap*gp*tp*cp*cp*cp*c)-3')
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1vkxA (A:)
ayveiieqpkqrgmrfrykcegrsagsipgerstdttkthptikingytgpgtvrislvt
kdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnn
npfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnrapntaelkicr
vnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppya
dpslqapvrvsmqlrrpsdrelsepmefqylpd
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1vkxB (B:)
gpylqileqpkqrgfrfryvcegpshgglpgasseknkksypqvkicnyvgpakvivqlv
tngknihlhahslvgkhcedgvctvtagpkdmvvgfanlgilhvtkkkvfetlearmtea
cirgynpgllvhsdlaylqaegggdrqltdrekeiirqaavqqtkemdlsvvrlmftafl
pdstgsftrrlepvvsdaiydskapnasnlkivrmdrtagcvtggeeiyllcdkvqkddi
qirfyeeeenggvwegfgdfsptdvhrqfaivfktpkykdvnitkpasvfvqlrrksdle
tsepkpflyype
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.