PDB entry 1vkp
View 1vkp on RCSB PDB site
Description: x-ray structure of gene product from arabidopsis thaliana at5g08170, agmatine iminohydrolase
Class: hydrolase
Keywords: structural genomics, protein structure initiative, At5g08170, POLYAMINE BIOSYNTHESIS, AGMATINE IMINOHYDROLASE, AIH, AGMATINE DEIMINASE, N-CARBAMOYLPUTRESCINE, PUTRESCINE, PSI, Center for Eukaryotic Structural Genomics, CESG
Deposited on
2004-06-15, released
2004-08-17
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 1.53 Å
R-factor: 0.148
AEROSPACI score: 0.65
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: agmatine iminohydrolase
Species: Arabidopsis thaliana [TaxId:3702]
Gene: At5g08170
Database cross-references and differences (RAF-indexed):
- Uniprot Q8GWW7
- modified residue (14)
- modified residue (84)
- modified residue (86)
- modified residue (158)
- modified residue (189)
- modified residue (227)
- modified residue (283)
Domains in SCOPe 2.04: d1vkpa_ - Chain 'B':
Compound: agmatine iminohydrolase
Species: Arabidopsis thaliana [TaxId:3702]
Gene: At5g08170
Database cross-references and differences (RAF-indexed):
- Uniprot Q8GWW7
- modified residue (14)
- modified residue (84)
- modified residue (86)
- modified residue (158)
- modified residue (189)
- modified residue (227)
- modified residue (283)
Domains in SCOPe 2.04: d1vkpb_ - Heterogens: MG, EDO, MPO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1vkpA (A:)
meesrespaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepv
tvcaspaqwenarkqlpedirvvemsmndswfrdsgptfivrkrpvklsslnrniagidw
nfnawggandgcyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteec
llnknrnphmskeqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvlls
wtddetdpqyersvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaip
rlagtrlaasyvnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivla
ggnihcitqqqpaeptsvaengh
Sequence, based on observed residues (ATOM records): (download)
>1vkpA (A:)
respaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepvtvca
spaqwenarkqlpedirvvemsmndswfrdsgptfivrkrnrniagidwnfnawggandg
cyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteecllnknrnphms
keqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvllswtddetdpqye
rsvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaiprlagtrlaasy
vnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivlaggnihcitqqq
paept
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1vkpB (B:)
meesrespaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepv
tvcaspaqwenarkqlpedirvvemsmndswfrdsgptfivrkrpvklsslnrniagidw
nfnawggandgcyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteec
llnknrnphmskeqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvlls
wtddetdpqyersvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaip
rlagtrlaasyvnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivla
ggnihcitqqqpaeptsvaengh
Sequence, based on observed residues (ATOM records): (download)
>1vkpB (B:)
spaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepvtvcasp
aqwenarkqlpedirvvemsmndswfrdsgptfivrkrnrniagidwnfnawggandgcy
ndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteecllnknrnphmske
qieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvllswtddetdpqyers
vealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaiprlagtrlaasyvn
fyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivlaggnihcitqqqpa
ept