PDB entry 1upn

View 1upn on RCSB PDB site
Description: complex of echovirus type 12 with domains 3 and 4 of its receptor decay accelerating factor (cd55) by cryo electron microscopy at 16 a
Class: virus/receptor
Keywords: virus/receptor, complex (virus coat/immune protein), echovirus, picornavirus, cd55, daf, electron microscopy, virus-receptor complex, icosahedral virus
Deposited on 2003-10-08, released 2004-01-07
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: EM
Resolution: 16 Å
R-factor: N/A
AEROSPACI score: -0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: echovirus 11 coat protein vp1
    Species: HUMAN ECHOVIRUS 11 [TaxId:12078]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8JKE8 (0-68)
      • conflict (225)
      • conflict (62)
    Domains in SCOPe 2.04: d1upna_
  • Chain 'B':
    Compound: echovirus 11 coat protein vp2
    Species: HUMAN ECHOVIRUS 11 [TaxId:12078]
    Domains in SCOPe 2.04: d1upn.1
  • Chain 'C':
    Compound: echovirus 11 coat protein vp3
    Species: HUMAN ECHOVIRUS 11 [TaxId:12078]
    Domains in SCOPe 2.04: d1upnc_
  • Chain 'D':
    Compound: echovirus 11 coat protein vp4
    Species: HUMAN ECHOVIRUS 11 [TaxId:12078]
    Domains in SCOPe 2.04: d1upn.1
  • Chain 'E':
    Compound: complement decay-accelerating factor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1upne1, d1upne2

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1upnA (A:)
gdvveavenavarvadtigsgpsnsqavpaltavetghtsqvtpsdtvqtrhvknyhsrs
essienflsrsacvymgeyhttnsdqtklfaswtisarrmvqmrrkleiftyvrfdvevt
fvitskqdqgtqlgqdmpplthqimyippggpipksvtdytwqtstnpsifwtegnappr
msipfisignaysnfydgwshfsqngvygyntlnhmgqiyvrhvngssplpmtstvrmyf
kpkhvkawvprpprlcqyknastvnfsptditdkrnsityipdtvkpdvsnh

    Sequence, based on observed residues (ATOM records): (download) 
    >1upnA (A:)
gdvveavenavarvadtigsgpsnsqavpaltavetghtsqvtpsdtvqtrhvknyhsrs
essienflsrsacvymgeyhttnsdqtklfaswtisarrmvqmrrkleiftyvrfdvevt
fvitskqdqgtqlgqdmpplthqimyippggpipksvtdytwqtstnpsifwtegnappr
msipfisignaysnfydgwshfsqngvygyntlnhmgqiyvrhvngssplpmtstvrmyf
kpkhvkawvprpprlcqyknastvnfsptditdkrnsityipdtvkpdv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1upnB (B:)
spsaeecgysdrvrsitlgnstittqesanvvvgygrwpeylrddeataedqptqpdvat
crfytlesvtwekdspgwwwkfpdalkdmglfgqnmyyhylgragytihvqcnaskfhqg
cllvvcvpeaemgcstvdgtvnehglsegetakkfsatgtngtntvqsivtnagmgvgvg
nltifphqwinlrtnncativmpyinnvpmdnmfrhhnftlmiipfvplnyssdfstyvp
itvtvapmcaeynglrlstalq

    Sequence, based on observed residues (ATOM records): (download) 
    >1upnB (B:)
sdrvrsitlgnstittqesanvvvgygrwpeylrddeataedqptqpdvatcrfytlesv
twekdspgwwwkfpdalkdmglfgqnmyyhylgragytihvqcnaskfhqgcllvvcvpe
aemgcstvdgtvnehglsegetakkfsatgtngtntvqsivtnagmgvgvgnltifphqw
inlrtnncativmpyinnvpmdnmfrhhnftlmiipfvplnyssdfstyvpitvtvapmc
aeynglrlstal

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1upnC (C:)
glpvintpgsnqfltsddfqspsampqfdvtpelnipgevqnlmeiaevdsvvpvnnvag
nletmdiyripvqsgnhqssqvfgfqvqpgldgvfkhtllgeilnyyahwsgsikltfvf
cgsamatgkfllayappganapksrkdamlgthiiwdvglqsscvlcipwisqthyrlvq
qdeytsagnvtcwyqtgivvpagtptscsimcfvsacndfsvrllkdtpfiqqaallq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1upnD (D:)
mgaqvstqktgahetglrasgnsiihytninyykdaasnsanrqdftqdpgkftepvkdi
mvkslpaln

    Sequence, based on observed residues (ATOM records): (download) 
    >1upnD (D:)
gaqvstqktgahesiihytninyykdaasnsanrqdftqdpgkftepvkdimvkslpaln

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1upnE (E:)
fckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvqwsdp
lpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnndegew
sgpppecrg

    Sequence, based on observed residues (ATOM records): (download) 
    >1upnE (E:)
kscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvqwsdplpec
reiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnndegewsgpp
pecrg