SCOPe 2.07: Structural Classification of Proteins — extended

PDB entry 1um3

View 1um3 on RCSB PDB site
Description: Crystal Structure of Cytochrome b6f Complex from M.laminosus
Class: photosynthesis
Keywords: photosynthesis, membrane protein complex, electron transfer complex
Deposited on 2003-09-22, released 2003-11-11
The last revision prior to the SCOPe 2.07 freeze date was dated 2004-04-20, with a file datestamp of 2007-04-25.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.258
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Cytochrome b6
Species: Mastigocladus laminosus
Domains in SCOPe 2.07: d1um3a_
Chain 'B':
Compound: subunit IV
Species: Mastigocladus laminosus
Domains in SCOPe 2.07: d1um3b_
Chain 'C':
Compound: cytochrome f
Species: Mastigocladus laminosus
Chain 'D':
Compound: Rieske iron-sulfur protein
Species: Mastigocladus laminosus
Domains in SCOPe 2.07: d1um3d1, d1um3d2
Chain 'E':
Compound: protein pet l
Species: Mastigocladus laminosus
Chain 'F':
Compound: protein pet m
Species: Mastigocladus laminosus
Domains in SCOPe 2.07: d1um3f_
Chain 'G':
Compound: protein pet g
Species: Mastigocladus laminosus
Chain 'H':
Compound: protein pet n
Species: Mastigocladus laminosus
Domains in SCOPe 2.07: d1um3h_
Chain 'N':
Compound: Cytochrome b6
Species: Mastigocladus laminosus
Domains in SCOPe 2.07: d1um3n_
Chain 'O':
Compound: subunit IV
Species: Mastigocladus laminosus
Domains in SCOPe 2.07: d1um3o_
Chain 'P':
Compound: cytochrome f
Species: Mastigocladus laminosus
Chain 'Q':
Compound: Rieske iron-sulfur protein
Species: Mastigocladus laminosus
Domains in SCOPe 2.07: d1um3q1, d1um3q2
Chain 'R':
Compound: protein pet l
Species: Mastigocladus laminosus
Chain 'S':
Compound: protein pet m
Species: Mastigocladus laminosus
Domains in SCOPe 2.07: d1um3s_
Chain 'T':
Compound: protein pet g
Species: Mastigocladus laminosus
Domains in SCOPe 2.07: d1um3t_
Chain 'U':
Compound: protein pet n
Species: Mastigocladus laminosus
Domains in SCOPe 2.07: d1um3u_
Heterogens: HEM, TDS, PL9, OPC, CLA, FES, BCR, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1um3A (A:)
manvydwfqerleiqaladdvtskyvpphvnifyclggitltcfliqfatgfamtfyykp
tvteayasvqyimnevsfgwlirsihrwsasmmvlmmilhvfrvyltggfkkpreltwis
gvilavitvsfgvtgyslpwdqvgywavkivsgvpeaipvvgvlisdllrggssvgqatl
tryysahtfvlpwliavfmllhflmirkqgisgpl

Sequence, based on observed residues (ATOM records): (download)

>1um3A (A:)
eiqaladdvtskyvpphvnifyclggitltcfliqfatgfamtfyykptvteayasvqyi
mnevsfgwlirsihrwsasmmvlmmilhvfrvyltggfkkpreltwisgvilavitvsfg
vtgyslpwdqvgywavkivsgvpeaipvvgvlisdllrggssvgqatltryysahtfvlp
wliavfmllhflmirkqgisgp

Chain 'B':
Sequence, based on SEQRES records: (download)

>1um3B (B:)
matlkkpdlsdpklraklakgmghnyygepawpndllyvfpvvimgtfacivalsvldpa
mvgepanpfatpleilpewylypvfqilrslpnkllgvllmasvplglilvpfienvnkf
qnpfrrpvattiflfgtlvtiwlgigaalpldktltlglf

Sequence, based on observed residues (ATOM records): (download)

>1um3B (B:)
lakgmghnyygepawpndllyvfpvvimgtfacivalsvldpamvgepanpfatpleilp
ewylypvfqilrslpnkllgvllmasvplglilvpfienvnkfqnpfrrpvattiflfgt
lvtiwlgigaalpldktl

Chain 'C':
No sequence available.

Chain 'D':
Sequence, based on SEQRES records: (download)

>1um3D (D:)
maqftesmdvpdmgrrqfmnllafgtvtgvalgalyplvkyfippsggavgggttakdkl
gnnvkvskfleshnagdrvlvqglkgdptyivveskeairdyginavcthlgcvvpwnaa
enkfkcpchgsqydetgrvirgpaplslalchatvqddnivltpwtetdfrtgekpwwv

Sequence, based on observed residues (ATOM records): (download)

>1um3D (D:)
dmgrrqfmnllafgtvtgvalgalyplvkyfippsggavgggttakdklgnnvkvskfle
shnagdrvlvqglkgdptyivveskeairdyginavcthlgcvvpwnaaenkfkcpchgs
qydetgrvirgpaplslalchatvqddnivltpwtetdfrtgekpwwv

Chain 'E':
No sequence available.
Chain 'F':
Sequence, based on SEQRES records: (download)
```
>1um3F (F:)
mteemlyaallsfglifvgwglgvlllkiqgaeke
```
Sequence, based on observed residues (ATOM records): (download)
```
>1um3F (F:)
mteemlyaallsfglifvgwglgvlllkiqgae
```
Chain 'G':
No sequence available.
Chain 'H':
Sequence, based on SEQRES records: (download)
```
>1um3H (H:)
meidvlgwvallvvftwsiamvvwgrngl
```
Sequence, based on observed residues (ATOM records): (download)
```
>1um3H (H:)
idvlgwvallvvftwsiamvvwgrngl
```

Chain 'N':
Sequence, based on SEQRES records: (download)

>1um3N (N:)
manvydwfqerleiqaladdvtskyvpphvnifyclggitltcfliqfatgfamtfyykp
tvteayasvqyimnevsfgwlirsihrwsasmmvlmmilhvfrvyltggfkkpreltwis
gvilavitvsfgvtgyslpwdqvgywavkivsgvpeaipvvgvlisdllrggssvgqatl
tryysahtfvlpwliavfmllhflmirkqgisgpl

Sequence, based on observed residues (ATOM records): (download)

>1um3N (N:)
eiqaladdvtskyvpphvnifyclggitltcfliqfatgfamtfyykptvteayasvqyi
mnevsfgwlirsihrwsasmmvlmmilhvfrvyltggfkkpreltwisgvilavitvsfg
vtgyslpwdqvgywavkivsgvpeaipvvgvlisdllrggssvgqatltryysahtfvlp
wliavfmllhflmirkqgisgp

Chain 'O':
Sequence, based on SEQRES records: (download)

>1um3O (O:)
matlkkpdlsdpklraklakgmghnyygepawpndllyvfpvvimgtfacivalsvldpa
mvgepanpfatpleilpewylypvfqilrslpnkllgvllmasvplglilvpfienvnkf
qnpfrrpvattiflfgtlvtiwlgigaalpldktltlglf

Sequence, based on observed residues (ATOM records): (download)

>1um3O (O:)
lakgmghnyygepawpndllyvfpvvimgtfacivalsvldpamvgepanpfatpleilp
ewylypvfqilrslpnkllgvllmasvplglilvpfienvnkfqnpfrrpvattiflfgt
lvtiwlgigaalpldktl

Chain 'P':
No sequence available.

Chain 'Q':
Sequence, based on SEQRES records: (download)

>1um3Q (Q:)
maqftesmdvpdmgrrqfmnllafgtvtgvalgalyplvkyfippsggavgggttakdkl
gnnvkvskfleshnagdrvlvqglkgdptyivveskeairdyginavcthlgcvvpwnaa
enkfkcpchgsqydetgrvirgpaplslalchatvqddnivltpwtetdfrtgekpwwv

Sequence, based on observed residues (ATOM records): (download)

>1um3Q (Q:)
dmgrrqfmnllafgtvtgvalgalyplvkyfippsggavgggttakdklgnnvkvskfle
shnagdrvlvqglkgdptyivveskeairdyginavcthlgcvvpwnaaenkfkcpchgs
qydetgrvirgpaplslalchatvqddnivltpwtetdfrtgekpwwv

Chain 'R':
No sequence available.
Chain 'S':
Sequence; same for both SEQRES and ATOM records: (download)
```
>1um3S (S:)
mteemlyaallsfglifvgwglgvlllkiqgaeke
```
Chain 'T':
Sequence, based on SEQRES records: (download)
```
>1um3T (T:)
mveplldglvlglvfatlgglfyaayqqykrpnelgg
```
Sequence, based on observed residues (ATOM records): (download)
```
>1um3T (T:)
lvlglvfatlgglfyaayqqykrpnel
```
Chain 'U':
Sequence, based on SEQRES records: (download)
```
>1um3U (U:)
meidvlgwvallvvftwsiamvvwgrngl
```
Sequence, based on observed residues (ATOM records): (download)
```
>1um3U (U:)
idvlgwvallvvftwsiamvvwgrngl
```