PDB entry 1uf2

View 1uf2 on RCSB PDB site
Description: the atomic structure of rice dwarf virus (rdv)
Deposited on 2003-05-23, released 2003-10-14
The last revision prior to the SCOP 1.69 freeze date was dated 2003-10-14, with a file datestamp of 2003-10-14.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.303
AEROSPACI score: -0.02 (click here for full SPACI score report)

Chains and heterogens:

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1uf2A (A:)
    mdstgraydgasefksvlvtegtshytpvevynildelktikitstiaeqsvvsrtpipl
    skiglqdvkklfdinvikcgsslrivdepqvtfivsyakdiydkfmciehdsayepsltm
    hrvrviysmlndycakmisevpyessfvgelpvksvtlnklgdrnmdalaehllfehdvv
    naqrenrifyqrksapavpvifgddlepavreranlyhrysvpyhqielalhalandlls
    iqychptvvynylssrapnflrlddqvslkltsagigtlmprpvvqlldydlvymsplal
    nnlasrllrkislhlvmqmvtavqqdlgevvsvssnvtnpasaclvrmnvqgvqtlavfi
    aqsmlnpnisygmisgltldcfsnfiygaclmlfqalippsaltarqrldinnrfayfli
    kchatqattarlvanqviypvdaidqwqsngrdvlvaiynnllpgelvltnliqtyfrgn
    taqqaaeilipadqtsyganetralsapylfgapinmlapdarlstykrdlalpdrspil
    ittvegqnsisienlrhktgliramylngfvtqppawirnansntallsrfldatpnllg
    iyeailantyanavnvycdsvyradipiewklhqsvdpqdllfgvfgivpqyqilneavp
    dffaggedililqliravydtlsnklgrnpadifhleevfkvieeivsvlvqqkidvrky
    ftesmrsgsfskprwdnflrrpvaqrlpnlysvimtqadhvynymtqlthiipitdcfyi
    vknsgfvdrgstgpviasssvyenvlkvvhtiadfdaanalrlqrrrvdntsytdslsdm
    fnglrsisssefvrsvngrsvftegridaikvnmrakfdlqfiteeggyskppnvkklmf
    sdflsfldshksdyrpplltvpitiglnnlgetnsntlrmrseaideyfssyvgaqilvp
    invvdtrvytefselrnfftgdvvirddpfdvwdgvkatyipigvhgvrldpngdqppl
    

    Sequence, based on observed residues (ATOM records): (download)
    >1uf2A (A:)
    qsvvsrtpiplskiglqdvkklfdinvikcgsslrivdepqvtfivsyakdiydkfmcie
    hdsayepsltmhrvrviysmlndycakmisevpyessfvgelpvksvtlnklgdrnmdal
    aehllfehdvvnaqrenrifyqrksapavpvifgddlepavreranlyhrysvpyhqiel
    alhalandllsiqychptvvynylssrapnflrlddqvslkltsagigtlmprpvvqlld
    ydlvymsplalnnlasrllrkislhlvmqmvtavqqdlgevvsvssnvtnpasaclvrmn
    vqgvqtlavfiaqsmlnpnisygmisgltldcfsnfiygaclmlfqalippsaltarqrl
    dinnrfayflikchatqattarlvanqviypvdaidqwqsngrdvlvaiynnllpgelvl
    tnliqtyfrgntaqqaaeilipadqtsyganetralsapylfgapinmlapdarlstykr
    dlalpdrspilittvegqnsisienlrhktgliramylngfvtqppawirnansntalls
    rfldatpnllgiyeailantyanavnvycdsvyradipiewklhqsvdpqdllfgvfgiv
    pqyqilneavpdffaggedililqliravydtlsnklgrnpadifhleevfkvieeivsv
    lvqqkidvrkyftesmrsgsfskprwdnflrrpvaqrlpnlysvimtqadhvynymtqlt
    hiipitdcfyivknsgfvdrgstgpviasssvyenvlkvvhtiadfdaanalrlqrrrvd
    ntsytdslsdmfnglrsisssefvrsvngrsvftegridaikvnmrakfdlqfiteeggy
    skppnvkklmfsdflsfldshksdyrpplltvpitiglnnlgetnsntlrmrseaideyf
    ssyvgaqilvpinvvdtrvytefselrnfftgdvvirddpfdvwdgvkatyipigvhgvr
    ldpngdq
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1uf2B (B:)
    mdstgraydgasefksvlvtegtshytpvevynildelktikitstiaeqsvvsrtpipl
    skiglqdvkklfdinvikcgsslrivdepqvtfivsyakdiydkfmciehdsayepsltm
    hrvrviysmlndycakmisevpyessfvgelpvksvtlnklgdrnmdalaehllfehdvv
    naqrenrifyqrksapavpvifgddlepavreranlyhrysvpyhqielalhalandlls
    iqychptvvynylssrapnflrlddqvslkltsagigtlmprpvvqlldydlvymsplal
    nnlasrllrkislhlvmqmvtavqqdlgevvsvssnvtnpasaclvrmnvqgvqtlavfi
    aqsmlnpnisygmisgltldcfsnfiygaclmlfqalippsaltarqrldinnrfayfli
    kchatqattarlvanqviypvdaidqwqsngrdvlvaiynnllpgelvltnliqtyfrgn
    taqqaaeilipadqtsyganetralsapylfgapinmlapdarlstykrdlalpdrspil
    ittvegqnsisienlrhktgliramylngfvtqppawirnansntallsrfldatpnllg
    iyeailantyanavnvycdsvyradipiewklhqsvdpqdllfgvfgivpqyqilneavp
    dffaggedililqliravydtlsnklgrnpadifhleevfkvieeivsvlvqqkidvrky
    ftesmrsgsfskprwdnflrrpvaqrlpnlysvimtqadhvynymtqlthiipitdcfyi
    vknsgfvdrgstgpviasssvyenvlkvvhtiadfdaanalrlqrrrvdntsytdslsdm
    fnglrsisssefvrsvngrsvftegridaikvnmrakfdlqfiteeggyskppnvkklmf
    sdflsfldshksdyrpplltvpitiglnnlgetnsntlrmrseaideyfssyvgaqilvp
    invvdtrvytefselrnfftgdvvirddpfdvwdgvkatyipigvhgvrldpngdqppl
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1uf2C (C:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssagyvsdprvp
    lqtmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqln
    nlslqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaq
    qqpffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvt
    atataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftil
    anrsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitny
    mdppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrp
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >1uf2C (C:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvsdprvplqtmsn
    mfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqlnnlslqp
    sakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaqqqpffv
    aerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvtatataa
    daattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftilanrsqa
    yytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitnymdppai
    paglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrpn
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1uf2D (D:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssagyvsdprvp
    lqtmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqln
    nlslqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaq
    qqpffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvt
    atataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftil
    anrsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitny
    mdppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrp
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >1uf2D (D:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvsvsdprvplqtm
    snmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqlnnlsl
    qpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaqqqpf
    fvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvtatat
    aadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftilanrs
    qayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitnymdpp
    aipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrpn
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1uf2E (E:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssagyvsdprvp
    lqtmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqln
    nlslqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaq
    qqpffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvt
    atataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftil
    anrsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitny
    mdppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrp
    n
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >1uf2F (F:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssagyvsdprvp
    lqtmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqln
    nlslqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaq
    qqpffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvt
    atataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftil
    anrsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitny
    mdppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrp
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >1uf2F (F:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvsdprvplqtmsn
    mfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqlnnlslqp
    sakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaqqqpffv
    aerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvtatataa
    daattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftilanrsqa
    yytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitnymdppai
    paglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrpn
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >1uf2G (G:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssagyvsdprvp
    lqtmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqln
    nlslqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaq
    qqpffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvt
    atataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftil
    anrsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitny
    mdppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrp
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >1uf2G (G:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvyvsdprvplqtm
    snmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqlnnlsl
    qpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaqqqpf
    fvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvtatat
    aadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftilanrs
    qayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitnymdpp
    aipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrpn
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1uf2H (H:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssagyvsdprvp
    lqtmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqln
    nlslqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaq
    qqpffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvt
    atataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftil
    anrsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitny
    mdppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrp
    n
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >1uf2I (I:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssagyvsdprvp
    lqtmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqln
    nlslqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaq
    qqpffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvt
    atataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftil
    anrsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitny
    mdppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrp
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >1uf2I (I:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssyvsdprvplq
    tmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqlnnl
    slqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaqqq
    pffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvtat
    ataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftilan
    rsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitnymd
    ppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrpn
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >1uf2J (J:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssagyvsdprvp
    lqtmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqln
    nlslqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaq
    qqpffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvt
    atataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftil
    anrsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitny
    mdppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrp
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >1uf2J (J:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsdprvplqtmsnmf
    vsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqlnnlslqpsa
    kpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaqqqpffvae
    rrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvtatataada
    attftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftilanrsqayy
    tlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitnymdppaipa
    glaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrpn
    

  • Chain 'P':
    Sequence, based on SEQRES records: (download)
    >1uf2P (P:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssagyvsdprvp
    lqtmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqln
    nlslqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaq
    qqpffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvt
    atataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftil
    anrsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitny
    mdppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrp
    n
    

    Sequence, based on observed residues (ATOM records): (download)
    >1uf2P (P:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlssdprvplqtmsnm
    fvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqlnnlslqps
    akpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaqqqpffva
    errrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvtatataad
    aattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftilanrsqay
    ytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitnymdppaip
    aglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrpn
    

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1uf2Q (Q:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssagyvsdprvp
    lqtmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqln
    nlslqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaq
    qqpffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvt
    atataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftil
    anrsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitny
    mdppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrp
    n
    

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1uf2R (R:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssagyvsdprvp
    lqtmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqln
    nlslqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaq
    qqpffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvt
    atataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftil
    anrsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitny
    mdppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrp
    n
    

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1uf2S (S:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssagyvsdprvp
    lqtmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqln
    nlslqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaq
    qqpffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvt
    atataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftil
    anrsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitny
    mdppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrp
    n
    

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1uf2T (T:)
    msrqmwldtsalleaiseyvvrcngdtfsglttgdfnalsnmftqlsvssagyvsdprvp
    lqtmsnmfvsfitstdrcgymlrktwfnsdtkptvsddfittyirprlqvpmsdtvrqln
    nlslqpsakpklyerqnaimkgldipysepiepcklfrsvagqtgnipmmgilatppaaq
    qqpffvaerrrilfgirsnaaipagayqfvvpawasvlsvtgayvyftnsffgtiiagvt
    atataadaattftvptdannlpvqtdsrlsfslgggninlelgvaktgfcvaiegeftil
    anrsqayytlnsitqtptsiddfdvsdflttflsqlracgqyeifsdamdqltnslitny
    mdppaipaglaftspwfrfserartilalqnvdlnirklivrhlwvitsliavfgryyrp
    n