PDB entry 1tdq

View 1tdq on RCSB PDB site
Description: Structural basis for the interactions between tenascins and the C-type lectin domains from lecticans: evidence for a cross-linking role for tenascins
Class: extracellular matrix
Keywords: extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain
Deposited on 2004-05-24, released 2004-08-31
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.21
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tenascin-R
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q05546 (13-End)
      • cloning artifact (11-12)
    Domains in SCOPe 2.07: d1tdqa1, d1tdqa2, d1tdqa3, d1tdqa4
  • Chain 'B':
    Compound: Aggrecan core protein
    Species: Rattus norvegicus [TaxId:10116]
    Gene: AGC1, AGC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tdqb_
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1tdqA (A:)
gspgisgggggipvidgptqilvrdvsdtvafvewtpprakvdfillkyglvggeggktt
frlqpplsqysvqalrpgsryevsisavrgtnesdasstqftteidapknlrvgsrtats
ldlewdnseaeaqeykvvystlageqyhevlvpkgigpttkttltdlvpgteygvgisav
mnskqsipatmnarteldsprdlmvtassetsisliwtkasgpidhyritftpssgisse
vtvprdrtsytltdlepgaeyiisitaergrqqslestvdaft

    Sequence, based on observed residues (ATOM records): (download) 
    >1tdqA (A:)
ipvidgptqilvrdvsdtvafvewtpprakvdfillkyglvggeggkttfrlqpplsqys
vqalrpgsryevsisavrgtnesdasstqftteidapknlrvgsrtatsldlewdnseae
aqeykvvystlageqyhevlvpkgigpttkttltdlvpgteygvgisavmnskqsipatm
narteldsprdlmvtassetsisliwtkasgpidhyritftpssgissevtvprdrtsyt
ltdlepgaeyiisitaergrqqslestvdaf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1tdqB (B:)
radqeqceegwtkfqghcyrhfpdretwvdaerrcreqqshlssivtpeeqefvnknaqd
yqwiglndrtiegdfrwsdghslqfekwrpnqpdnffatgedcvvmiwhergewndvpcn
yqlpftckkg

    Sequence, based on observed residues (ATOM records): (download) 
    >1tdqB (B:)
eqceegwtkfqghcyrhfpdretwvdaerrcreqqshlssivtpeeqefvnknaqdyqwi
glndrtiegdfrwsdghslqfekwrpnqpdnffatgedcvvmiwhergewndvpcnyqlp
ftckkg