PDB entry 1svm

View 1svm on RCSB PDB site
Description: Co-crystal structure of SV40 large T antigen helicase domain and ATP
Class: Viral protein
Keywords: AAA+ fold, Viral protein
Deposited on 2004-03-29, released 2004-10-19
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.94 Å
R-factor: 0.218
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: large t antigen
    Species: Simian virus 40 [TaxId:10633]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1svma_
  • Chain 'B':
    Compound: large t antigen
    Species: Simian virus 40 [TaxId:10633]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1svmb_
  • Chain 'C':
    Compound: large t antigen
    Species: Simian virus 40 [TaxId:10633]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1svmc_
  • Chain 'D':
    Compound: large t antigen
    Species: Simian virus 40 [TaxId:10633]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1svmd_
  • Chain 'E':
    Compound: large t antigen
    Species: Simian virus 40 [TaxId:10633]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1svme_
  • Chain 'F':
    Compound: large t antigen
    Species: Simian virus 40 [TaxId:10633]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1svmf_
  • Heterogens: ZN, MG, ATP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1svmA (A:)
glkehdfnpeeaeetkqvswklvteyametkcddvllllgmylefqysfemclkcikkeq
pshykyhekhyanaaifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlld
rmdimfgstgsadieewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpids
gkttlaaallelcggkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqg
innldnlrdyldgsvkvnlekkhlnkrtqifppgivtmneysvpktlqarfvkqidfrpk
dylkhclersefllekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefsls
vyqkmkfnvamgigvld

    Sequence, based on observed residues (ATOM records): (download) 
    >1svmA (A:)
kqvswklvteyametkcddvllllgmylefqysfemclkcikkeqpshykyhekhyanaa
ifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlldrmdimfgstgsadie
ewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpidsgkttlaaallelcgg
kalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqginnldnlrdyldgsv
kvnlekkhlnkrtqifppgivtmneysvpktlqarfvkqidfrpkdylkhclerseflle
kriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefslsvyqkmkfnvamgigv
ld

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1svmB (B:)
glkehdfnpeeaeetkqvswklvteyametkcddvllllgmylefqysfemclkcikkeq
pshykyhekhyanaaifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlld
rmdimfgstgsadieewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpids
gkttlaaallelcggkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqg
innldnlrdyldgsvkvnlekkhlnkrtqifppgivtmneysvpktlqarfvkqidfrpk
dylkhclersefllekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefsls
vyqkmkfnvamgigvld

    Sequence, based on observed residues (ATOM records): (download) 
    >1svmB (B:)
kqvswklvteyametkcddvllllgmylefqysfemclkcikkeqpshykyhekhyanaa
ifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlldrmdimfgstgsadie
ewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpidsgkttlaaallelcgg
kalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqginnldnlrdyldgsv
kvnlekkhlnkrtqifppgivtmneysvpktlqarfvkqidfrpkdylkhclerseflle
kriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefslsvyqkmkfnvamgigv
ld

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1svmC (C:)
glkehdfnpeeaeetkqvswklvteyametkcddvllllgmylefqysfemclkcikkeq
pshykyhekhyanaaifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlld
rmdimfgstgsadieewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpids
gkttlaaallelcggkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqg
innldnlrdyldgsvkvnlekkhlnkrtqifppgivtmneysvpktlqarfvkqidfrpk
dylkhclersefllekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefsls
vyqkmkfnvamgigvld

    Sequence, based on observed residues (ATOM records): (download) 
    >1svmC (C:)
tkqvswklvteyametkcddvllllgmylefqysfemclkcikkeqpshykyhekhyana
aifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlldrmdimfgstgsadi
eewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpidsgkttlaaallelcg
gkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqginnldnlrdyldgs
vkvnlekkhlnkrtqifppgivtmneysvpktlqarfvkqidfrpkdylkhclersefll
ekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefslsvyqkmkfnvamgig
vld

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1svmD (D:)
glkehdfnpeeaeetkqvswklvteyametkcddvllllgmylefqysfemclkcikkeq
pshykyhekhyanaaifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlld
rmdimfgstgsadieewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpids
gkttlaaallelcggkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqg
innldnlrdyldgsvkvnlekkhlnkrtqifppgivtmneysvpktlqarfvkqidfrpk
dylkhclersefllekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefsls
vyqkmkfnvamgigvld

    Sequence, based on observed residues (ATOM records): (download) 
    >1svmD (D:)
kqvswklvteyametkcddvllllgmylefqysfemclkcikkeqpshykyhekhyanaa
ifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlldrmdimfgstgsadie
ewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpidsgkttlaaallelcgg
kalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqginnldnlrdyldgsv
kvnlekkhlnkrtqifppgivtmneysvpktlqarfvkqidfrpkdylkhclerseflle
kriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefslsvyqkmkfnvamgigv
ld

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1svmE (E:)
glkehdfnpeeaeetkqvswklvteyametkcddvllllgmylefqysfemclkcikkeq
pshykyhekhyanaaifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlld
rmdimfgstgsadieewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpids
gkttlaaallelcggkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqg
innldnlrdyldgsvkvnlekkhlnkrtqifppgivtmneysvpktlqarfvkqidfrpk
dylkhclersefllekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefsls
vyqkmkfnvamgigvld

    Sequence, based on observed residues (ATOM records): (download) 
    >1svmE (E:)
kqvswklvteyametkcddvllllgmylefqysfemclkcikkeqpshykyhekhyanaa
ifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlldrmdimfgstgsadie
ewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpidsgkttlaaallelcgg
kalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqginnldnlrdyldgsv
kvnlekkhlnkrtqifppgivtmneysvpktlqarfvkqidfrpkdylkhclerseflle
kriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefslsvyqkmkfnvamgigv
ld

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1svmF (F:)
glkehdfnpeeaeetkqvswklvteyametkcddvllllgmylefqysfemclkcikkeq
pshykyhekhyanaaifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlld
rmdimfgstgsadieewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpids
gkttlaaallelcggkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqg
innldnlrdyldgsvkvnlekkhlnkrtqifppgivtmneysvpktlqarfvkqidfrpk
dylkhclersefllekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefsls
vyqkmkfnvamgigvld

    Sequence, based on observed residues (ATOM records): (download) 
    >1svmF (F:)
tkqvswklvteyametkcddvllllgmylefqysfemclkcikkeqpshykyhekhyana
aifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlldrmdimfgstgsadi
eewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpidsgkttlaaallelcg
gkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqginnldnlrdyldgs
vkvnlekkhlnkrtqifppgivtmneysvpktlqarfvkqidfrpkdylkhclersefll
ekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefslsvyqkmkfnvamgig
vld