PDB entry 1sid

View 1sid on RCSB PDB site
Description: murine polyomavirus complexed with 3'sialyl lactose
Class: Virus
Keywords: COAT PROTEIN, Icosahedral virus
Deposited on 1995-12-12, released 1996-06-20
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-08-04, with a file datestamp of 2009-07-31.
Experiment type: XRAY
Resolution: 3.65 Å
R-factor: 0.236
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: polyomavirus coat protein vp1
    Species: Mouse polyomavirus (strain p16 small-plaque) [TaxId:47935]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1sida_
  • Chain 'B':
    Compound: polyomavirus coat protein vp1
    Species: Mouse polyomavirus (strain p16 small-plaque) [TaxId:47935]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1sidb_
  • Chain 'C':
    Compound: polyomavirus coat protein vp1
    Species: Mouse polyomavirus (strain p16 small-plaque) [TaxId:47935]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1sidc_
  • Chain 'D':
    Compound: polyomavirus coat protein vp1
    Species: Mouse polyomavirus (strain p16 small-plaque) [TaxId:47935]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1sidd_
  • Chain 'E':
    Compound: polyomavirus coat protein vp1
    Species: Mouse polyomavirus (strain p16 small-plaque) [TaxId:47935]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1side_
  • Chain 'F':
    Compound: polyomavirus coat protein vp1
    Species: Mouse polyomavirus (strain p16 small-plaque) [TaxId:47935]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1sidf_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1sidA (A:)
apkrkagvskcetkctkacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqp
ptpeslteggqyygwsrginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmw
eavsvktevvgsgslldvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtd
artkykeegvvtiktitkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryf
gnytggtttppvlqftntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwr
glpryfkitlrkrwvknpypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepv
pgdpdmtryvdrfgktktvfpgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sidA (A:)
kacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygws
rginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgsll
dvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtdartkykeegvvtikti
tkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryfgnytggtttppvlqft
ntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk
npypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepvpgdpdmtryvdrfgkt
ktvfpg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1sidB (B:)
apkrkagvskcetkctkacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqp
ptpeslteggqyygwsrginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmw
eavsvktevvgsgslldvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtd
artkykeegvvtiktitkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryf
gnytggtttppvlqftntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwr
glpryfkitlrkrwvknpypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepv
pgdpdmtryvdrfgktktvfpgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sidB (B:)
kacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygws
rginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgsll
dvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtdartkykeegvvtikti
tkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryfgnytggtttppvlqft
ntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk
npypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepvpgdpdmtryvdrfgkt
ktvfpgn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1sidC (C:)
apkrkagvskcetkctkacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqp
ptpeslteggqyygwsrginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmw
eavsvktevvgsgslldvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtd
artkykeegvvtiktitkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryf
gnytggtttppvlqftntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwr
glpryfkitlrkrwvknpypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepv
pgdpdmtryvdrfgktktvfpgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sidC (C:)
kacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygws
rginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgsll
dvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtdartkykeegvvtikti
tkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryfgnytggtttppvlqft
ntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk
npypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepvpgdpdmtryvdrf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1sidD (D:)
apkrkagvskcetkctkacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqp
ptpeslteggqyygwsrginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmw
eavsvktevvgsgslldvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtd
artkykeegvvtiktitkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryf
gnytggtttppvlqftntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwr
glpryfkitlrkrwvknpypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepv
pgdpdmtryvdrfgktktvfpgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sidD (D:)
kacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygws
rginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgsll
dvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtdartkykeegvvtikti
tkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryfgnytggtttppvlqft
ntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk
npypmaslisslfnnmlpqvqgqpmegentqveevrvydg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1sidE (E:)
apkrkagvskcetkctkacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqp
ptpeslteggqyygwsrginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmw
eavsvktevvgsgslldvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtd
artkykeegvvtiktitkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryf
gnytggtttppvlqftntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwr
glpryfkitlrkrwvknpypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepv
pgdpdmtryvdrfgktktvfpgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sidE (E:)
kacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygws
rginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgsll
dvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtdartkykeegvvtikti
tkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryfgnytggtttppvlqft
ntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk
npypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepvpgdpdmtryvdrfgkt
ktvfpgn

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1sidF (F:)
apkrkagvskcetkctkacprpapvpkllikggmevldlvtgpdsvteieaflnprmgqp
ptpeslteggqyygwsrginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmw
eavsvktevvgsgslldvhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtd
artkykeegvvtiktitkkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryf
gnytggtttppvlqftntlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwr
glpryfkitlrkrwvknpypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepv
pgdpdmtryvdrfgktktvfpgn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sidF (F:)
acprpapvpkllikggmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsr
ginlatsdtedspgnntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgslld
vhgfnkptdtvntkgistpvegsqyhvfavggepldlqglvtdartkykeegvvtiktit
kkdmvnkdqvlnpiskakldkdgmypveiwhpdpaknentryfgnytggtttppvlqftn
tlttvlldengvgplckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvkn
pypmaslisslfnnmlpqvqgqpmegentqveevrvydgtepvpgdpdmtryvd