SCOPe 2.07: Structural Classification of Proteins

PDB entry 1s3s

View 1s3s on RCSB PDB site
Description: Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C
Class: protein binding
Keywords: AAA ATPase, p97, p47, protein-protein complex, UBX domain, PROTEIN BINDING
Deposited on 2004-01-14, released 2004-03-30
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.248
AEROSPACI score: -1.8 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin containing protein) (VCP) [Contains: Valosin]
Species: Mus musculus [TaxId:10090]
Gene: VCP
Database cross-references and differences (RAF-indexed):
- Uniprot Q01853 (Start-457)
Domains in SCOPe 2.07: d1s3sa1, d1s3sa2, d1s3sa3
Chain 'B':
Compound: Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin containing protein) (VCP) [Contains: Valosin]
Species: Mus musculus [TaxId:10090]
Gene: VCP
Database cross-references and differences (RAF-indexed):
- Uniprot Q01853 (Start-457)
Domains in SCOPe 2.07: d1s3sb1, d1s3sb2, d1s3sb3
Chain 'C':
Compound: Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin containing protein) (VCP) [Contains: Valosin]
Species: Mus musculus [TaxId:10090]
Gene: VCP
Database cross-references and differences (RAF-indexed):
- Uniprot Q01853 (Start-457)
Domains in SCOPe 2.07: d1s3sc1, d1s3sc2, d1s3sc3
Chain 'D':
Compound: Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin containing protein) (VCP) [Contains: Valosin]
Species: Mus musculus [TaxId:10090]
Gene: VCP
Database cross-references and differences (RAF-indexed):
- Uniprot Q01853 (Start-457)
Domains in SCOPe 2.07: d1s3sd1, d1s3sd2, d1s3sd3
Chain 'E':
Compound: Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin containing protein) (VCP) [Contains: Valosin]
Species: Mus musculus [TaxId:10090]
Gene: VCP
Database cross-references and differences (RAF-indexed):
- Uniprot Q01853 (Start-457)
Domains in SCOPe 2.07: d1s3se1, d1s3se2, d1s3se3
Chain 'F':
Compound: Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)- ATPase p97 subunit) (Valosin containing protein) (VCP) [Contains: Valosin]
Species: Mus musculus [TaxId:10090]
Gene: VCP
Database cross-references and differences (RAF-indexed):
- Uniprot Q01853 (Start-457)
Domains in SCOPe 2.07: d1s3sf1, d1s3sf2, d1s3sf3
Chain 'G':
Compound: p47 protein
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
- Uniprot O35987 (Start-126)
Domains in SCOPe 2.07: d1s3sg_
Chain 'H':
Compound: p47 protein
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
- Uniprot O35987 (Start-126)
Domains in SCOPe 2.07: d1s3sh_
Chain 'I':
Compound: p47 protein
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
- Uniprot O35987
Domains in SCOPe 2.07: d1s3si_
Heterogens: ADP, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1s3sA (A:)
masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
vihcegepikredeeeslnevgyddvggcrkqlaqikemvelplrhpalfkaigvkpprg
illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
qairkkmdlidledetidaevmnslavtmddfrwalsq