PDB entry 1run

View 1run on RCSB PDB site
Description: catabolite gene activator protein (cap)/DNA complex + adenosine-3',5'-cyclic-monophosphate
Class: transcription/DNA
Keywords: transcription regulation; 3d-structure; DNA-binding; camp-binding; activator
Deposited on 1996-05-26, released 1997-01-10
The last revision prior to the SCOP 1.75 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.207
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (catabolite gene activator protein (cap))
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1runa1, d1runa2
  • Chain 'B':
    Compound: protein (catabolite gene activator protein (cap))
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1runb1, d1runb2
  • Chain 'C':
    Compound: DNA (5'-d(*gp*cp*gp*ap*ap*ap*ap*ap*tp*gp*tp*gp*ap*t)-3')
  • Chain 'D':
    Compound: DNA (5'-d(*cp*tp*ap*gp*ap*tp*cp*ap*cp*ap*tp*tp*tp*tp*tp*cp*g )-3')
  • Chain 'E':
    Compound: DNA (5'-d(*gp*cp*gp*ap*ap*ap*ap*ap*tp*gp*tp*gp*ap*t)-3')
  • Chain 'F':
    Compound: DNA (5'-d(*cp*tp*ap*gp*ap*tp*cp*ap*cp*ap*tp*tp*tp*tp*tp*cp*g )-3')
  • Heterogens: CMP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1runA (A:)
vlgkpqtdptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemi
lsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqm
arrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsr
etvgrilkmledqnlisahgktivvygtr

    Sequence, based on observed residues (ATOM records): (download) 
    >1runA (A:)
ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgd
figelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvts
ekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsretvgrilk
mledqnlisahgktivvygtr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1runB (B:)
vlgkpqtdptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemi
lsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqm
arrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsr
etvgrilkmledqnlisahgktivvygtr

    Sequence, based on observed residues (ATOM records): (download) 
    >1runB (B:)
ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgd
figelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvts
ekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsretvgrilk
mledqnlisahgktivv

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.