PDB entry 1qgc

View 1qgc on RCSB PDB site
Description: structure of the complex of an fab fragment of a neutralizing antibody with foot and mouth disease virus
Class: Virus/Immune system
Keywords: VIRUS-ANTIBODY COMPLEX, Icosahedral virus, Virus-Immune system COMPLEX
Deposited on 1999-04-23, released 2000-01-26
The last revision prior to the SCOPe 2.02 freeze date was dated 2011-10-19, with a file datestamp of 2011-10-14.
Experiment type: EM
Resolution: 30 Å
R-factor: N/A
AEROSPACI score: -0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: protein (virus capsid protein)
    Species: Foot-and-mouth disease virus - type C [TaxId:12116]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1qgc1_
  • Chain '2':
    Compound: protein (virus capsid protein)
    Species: Foot-and-mouth disease virus - type C [TaxId:12116]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1qgc2_
  • Chain '3':
    Compound: protein (virus capsid protein)
    Species: Foot-and-mouth disease virus - type C [TaxId:12116]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1qgc3_
  • Chain '4':
    Compound: protein (immunoglobulin)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1QGC (0-437)
    Domains in SCOPe 2.02: d1qgc4_
  • Chain '5':
    Compound: protein (gh-loop from virus capsid protein vp1)
    Species: Foot-and-mouth disease virus - type C [TaxId:12116]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1qgc5_

PDB Chain Sequences:

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qgc1 (1:)
ttttgesadpvtttvenyggetqvqrrhhtdvafvldrfvkvtvsdnqhtldvmqahkdn
ivgallraatyyfsdleiavthtgkltwvpngapvsalnnttnptayhkgpvtrlalpyt
aphrvlataytgtsfnfgavkaetitellvrmkraelycprpilpiqptgdrhkqplvap
akq

  • Chain '2':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qgc2 (2:)
dkkteettlledrilttrnghttsttqssvgvtfgyataedstsgpntsaletrvhqaer
ffkmalfdwvpsqnfghmhkvvlphepkgvygglvksyaymrngwdvevtavgnqfnggc
llvalvpemgdisdrekyqltlyphqfinprtnmtahitvpyvgvnrydqykqhrpwtlv
vmvvaplttntagaqqikvyaniaptnvhvagelpske

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qgc3 (3:)
gifpvacsdgygnmvttdpktadpaygkvynpprtalpgrftnyldvaeacptflmfenv
pyvstrtdgqrllakfdvslaakhmsntylaglaqyytqytgtinlhfmftgptdakary
mvayvppgmdapdnpeeaahcihaewdtglnskftfsipyisaadytytasheaettcvq
gwvcvyqithgkadadalvvsasagkdfelrlpvdarqq

  • Chain '4':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qgc4 (4:)
divltqspaslavslgqratiscrasesvdssghsfmhwyqqkpgqppklliyrasnles
gipdrfsgsgsrtdftltidpveaddvatyycqqsnevpltfgagtkldlkradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrnecevmlvesggglvkpggslklsc
tasgfifnrcamswvrqtpekrlewvatissggtytyypdsvkgrftisrdnakntlylq
msslrsadtamyycvrredggdegfaywgqgtvvtvsaakttppsvyplapgsaaaaasm
vtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssvtvpsstwpsetvtc
nvahpasstkvdkkivpr

  • Chain '5':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qgc5 (5:)
ttaytasargdlahltttaartlp