PDB entry 1pfo

View 1pfo on RCSB PDB site
Description: perfringolysin o
Class: toxin
Keywords: toxin, thiol-activated cytolysin, hemolysis, cytolysis
Deposited on 1997-07-31, released 1998-08-05
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.211
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: perfringolysin O
    Species: Clostridium perfringens [TaxId:1502]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19995 (Start-499)
      • conflict (113)
    Domains in SCOPe 2.07: d1pfoa_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1pfoA (A:)
mirfkktkliasiamalclfsqpvisfskditdknqsidsgisslsynrnevlasngdki
esfvpkegkkagnkfivverqkrslttspvdisiidsvndrtypgalqladkalvenrpt
ilmvkrkpininidlpglkgensikvddptygkvsgaidelvskwnekyssthtlpartq
ysesmvysksqissalnvnakvlenslgvdfnavannekkvmilaykqifytvsadlpkn
psdlfddsvtfndlkqkgvsneapplmvsnvaygrtiyvklettssskdvqaafkalikn
tdiknsqqykdiyenssftavvlggdaqehnkvvtkdfdeirkvikdnatfstknpaypi
sytsvflkdnsvaavhnktdyiettsteyskgkinldhsgayvaqfevawdevsydkegn
evlthktwdgnyqdktahystvipleanarnirikarectglawewwrdviseydvpltn
ninvsiwgttlypgssityn

    Sequence, based on observed residues (ATOM records): (download) 
    >1pfoA (A:)
ditdknqsidsgisslsynrnevlasngdkiesfvpkegkkagnkfivverqkrslttsp
vdisiidsvndrtypgalqladkalvenrptilmvkrkpininidlpglkgensikvddp
tygkvsgaidelvskwnekyssthtlpartqysesmvysksqissalnvnakvlenslgv
dfnavannekkvmilaykqifytvsadlpknpsdlfddsvtfndlkqkgvsneapplmvs
nvaygrtiyvklettssskdvqaafkalikntdiknsqqykdiyenssftavvlggdaqe
hnkvvtkdfdeirkvikdnatfstknpaypisytsvflkdnsvaavhnktdyiettstey
skgkinldhsgayvaqfevawdevsydkegnevlthktwdgnyqdktahystvipleana
rnirikarectglawewwrdviseydvpltnninvsiwgttlypgssityn