PDB entry 1pd0

View 1pd0 on RCSB PDB site
Description: Crystal structure of the COPII coat subunit, Sec24, complexed with a peptide from the SNARE protein Sed5 (yeast syntaxin-5)
Class: transport protein
Keywords: transport protein
Deposited on 2003-05-18, released 2003-08-19
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.206
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein transport protein SEC24
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1pd0a1, d1pd0a2, d1pd0a3, d1pd0a4, d1pd0a5
  • Chain 'B':
    Compound: COPII-binding peptide of the integral membrane protein SED5
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1pd0A (A:)
aapaygqpsaamgqnmrpmnqlypidlltelpppitdltlpppplvippermlvpselsn
aspdyirstlnavpknssllkksklpfglvirpyqhlyddidppplnedglivrcrrcrs
ymnpfvtfieqgrrwrcnfcrlandvpmqmdqsdpndpksrydrneikcavmeymapkey
tlrqpppatycflidvsqssiksgllattintllqnldsipnhdertrisilcvdnaihy
fkipldsenneesadqinmmdiadleepflprpnsmvvslkacrqnietlltkipqifqs
nlitnfalgpalksayhliggvggkiivvsgtlpnlgigklqrrnesgvvntsketaqll
scqdsfyknftidcskvqitvdlflasedymdvaslsnlsrftagqthfypgfsgknpnd
ivkfstefakhismdfcmetvmrargstglrmsrfyghffnrssdlcafstmprdqsylf
evnvdesimadycyvqvavllslnnsqrririitlamptteslaevyasadqlaiasfyn
skavekalnsslddarvlinksvqdilatykkeivvsntaggaplrlcanlrmfpllmhs
ltkhmafrsgivpsdhrasalnnleslplkylikniypdvyslhdmadeaglpvqtedge
atgtivlpqpinatsslferyglylidngnelflwmggdavpalvfdvfgtqdifdipig
kqeipvvensefnqrvrniinqlrnhddvityqslyivrgaslsepvnhasarevatlrl
wasstlvedkilnnesyreflqimkarisk

    Sequence, based on observed residues (ATOM records): (download) 
    >1pd0A (A:)
rpmnqlypidlltelpppitdltlpppplvippermlvpselsnaspdyirstlnavpkn
ssllkksklpfglvirpyqhlyddidppplnedglivrcrrcrsymnpfvtfieqgrrwr
cnfcrlandvpmqmdqpksrydrneikcavmeymapkeytlrqpppatycflidvsqssi
ksgllattintllqnldsipnhdertrisilcvdnaihyfkipldseninmmdiadleep
nsmvvslkacrqnietlltkipqifqsnlitnfalgpalksayhliggvggkiivvsgtl
pnlgigklqrdsfyknftidcskvqitvdlflasedymdvaslsnlsrftagqthfypgf
sgknpndivkfstefakhismdfcmetvmrargstglrmsrfyghffnrssdlcafstmp
rdqsylfevnvdesimadycyvqvavllslnnsqrririitlamptteslaevyasadql
aiasfynskavekalnsslddarvlinksvqdilatykkeivggaplrlcanlrmfpllm
hsltkhmafrsgivpsdhrasalnnleslplkylikniypdvyslhdmadeaglpvgtiv
lpqpinatsslferyglylidngnelflwmggdavpalvfdvfgtqdifdipigkqeipv
vensefnqrvrniinqlrnhddvityqslyivrgaarevatlrlwasstlvedkilnnes
yreflqimkarisk

  • Chain 'B':
    No sequence available.