PDB entry 1ojv

View 1ojv on RCSB PDB site
Description: decay accelerating factor (cd55): the structure of an intact human complement regulator.
Class: regulator of complement pathway
Keywords: regulator of complement pathway, regulator of complement, decay acceleration of c3/c5 convertases, pathogen receptor, short consensus repeat domains,
Deposited on 2003-07-16, released 2004-01-07
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.21
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: complement decay-accelerating factor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 1OJV (253-253)
      • see remark 999 (47)
    • Uniprot P08174 (2-252)
    Domains in SCOPe 2.04: d1ojva1, d1ojva2, d1ojva3, d1ojva4
  • Chain 'B':
    Compound: complement decay-accelerating factor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 1OJV (253-253)
      • see remark 999 (47)
    • Uniprot P08174 (2-252)
    Domains in SCOPe 2.04: d1ojvb1, d1ojvb2, d1ojvb3, d1ojvb4
  • Heterogens: ACT, SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ojvA (A:)
mqdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsdiee
fcnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkws
tavefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvq
wsdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnd
egewsgpppecrgc

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ojvB (B:)
mqdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsdiee
fcnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkws
tavefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvq
wsdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnd
egewsgpppecrgc

    Sequence, based on observed residues (ATOM records): (download) 
    >1ojvB (B:)
qdcglppdvpnaqpalegrtsfpedtvitykceesfvkipgekdsviclkgsqwsdieef
cnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkwst
avefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvqw
sdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnde
gewsgpppecrgc