PDB entry 1ohf

View 1ohf on RCSB PDB site
Description: the refined structure of nudaurelia capensis omega virus
Class: virus
Keywords: virus, viral coat, auto-catalytic cleavage, quasiequivalence, nwv, icosahedral virus
Deposited on 2003-05-26, released 2004-02-26
The last revision prior to the SCOPe 2.02 freeze date was dated 2010-11-17, with a file datestamp of 2010-11-12.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.219
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nudaurelia capensis omega virus capsid protein
    Species: NUDAURELIA CAPENSIS OMEGA VIRUS [TaxId:12541]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q90063
      • see remark 999 (234)
      • see remark 999 (282)
    Domains in SCOPe 2.02: d1ohfa_
  • Chain 'B':
    Compound: nudaurelia capensis omega virus capsid protein
    Species: NUDAURELIA CAPENSIS OMEGA VIRUS [TaxId:12541]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q90063
      • see remark 999 (234)
      • see remark 999 (282)
    Domains in SCOPe 2.02: d1ohfb_
  • Chain 'C':
    Compound: nudaurelia capensis omega virus capsid protein
    Species: NUDAURELIA CAPENSIS OMEGA VIRUS [TaxId:12541]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q90063
      • see remark 999 (234)
      • see remark 999 (282)
    Domains in SCOPe 2.02: d1ohfc_
  • Chain 'D':
    Compound: nudaurelia capensis omega virus capsid protein
    Species: NUDAURELIA CAPENSIS OMEGA VIRUS [TaxId:12541]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q90063
      • see remark 999 (234)
      • see remark 999 (282)
    Domains in SCOPe 2.02: d1ohfd_
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ohfA (A:)
mdsnsasgkrrsrnvriaantvnvapkqrqargrrarsrannidnvtaaaqelgqsldan
vitfptnvatmpefrswargkldidqdsigwyfkyldpagatesaravgeyskipdglvk
fsvdaeireiyneecptvsdasipldgaqwslsiisypmfrtayfavanvdnkeisldvt
ndlivwlnnlaswrdvvdsgqwftfsddptwfvrirvlhptydlpdptegllrtvsdyrl
tyksitceanmptlvdqgfwigghyaltpiattqnavegsgfvhpfnvtrpgiaagvtlt
wasmppggsapsgdpawipdsttqfqwrhggfdaptgvitytiprgytmqyfdtttnewn
gfanpddvvtfgqtggaagtnatititaptvtltilatttsaanvinfrnldaettaasn
rsevplppltfgqtapnnpkieqtlvkdtlgsylvhskmrnpvfqltpassfgaisftnp
gfdrnldlpgfggirdsldvnmstavchfrslskscsivtktyqgwegvtnvntpfgqfa
hsgllkndeilcladdlatrltgvygatdnfaaavlafaanmltsvlkseattsvikelg
nqatglanqglarlpgllasipgkiaarvrarrdrrraarmnnn

    Sequence, based on observed residues (ATOM records): (download) 
    >1ohfA (A:)
vitfptnvatmpefrswargkldidqdsigwyfkyldpagatesaravgeyskipdglvk
fsvdaeireiyneecptvsdasipldgaqwslsiisypmfrtayfavanvdnkeisldvt
ndlivwlnnlaswrdvvdsgqwftfsddptwfvrirvlhptydlpdptegllrtvsdyrl
tyksitceanmptlvdqgfwigghyaltpiattqnavegsgfvhpfnvtrpgiaagvtlt
wasmppggsapsgdpawipdsttqfqwrhggfdaptgvitytiprgytmqyfdtttnewn
gfanpddvvtfgqtggaagtnatititaptvtltilatttsaanvinfrnldaettaasn
rsevplppltfgqtapnnpkieqtlvkdtlgsylvhskmrnpvfqltpassfgaisftnp
gfdrnldlpgfggirdsldvnmstavchfrslskscsivtktyqgwegvtnvntpfgqfa
hsgllkndeilcladdlatrltgvygatdnfaaavlafaanmltsvlkseattsvikel

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ohfB (B:)
mdsnsasgkrrsrnvriaantvnvapkqrqargrrarsrannidnvtaaaqelgqsldan
vitfptnvatmpefrswargkldidqdsigwyfkyldpagatesaravgeyskipdglvk
fsvdaeireiyneecptvsdasipldgaqwslsiisypmfrtayfavanvdnkeisldvt
ndlivwlnnlaswrdvvdsgqwftfsddptwfvrirvlhptydlpdptegllrtvsdyrl
tyksitceanmptlvdqgfwigghyaltpiattqnavegsgfvhpfnvtrpgiaagvtlt
wasmppggsapsgdpawipdsttqfqwrhggfdaptgvitytiprgytmqyfdtttnewn
gfanpddvvtfgqtggaagtnatititaptvtltilatttsaanvinfrnldaettaasn
rsevplppltfgqtapnnpkieqtlvkdtlgsylvhskmrnpvfqltpassfgaisftnp
gfdrnldlpgfggirdsldvnmstavchfrslskscsivtktyqgwegvtnvntpfgqfa
hsgllkndeilcladdlatrltgvygatdnfaaavlafaanmltsvlkseattsvikelg
nqatglanqglarlpgllasipgkiaarvrarrdrrraarmnnn

    Sequence, based on observed residues (ATOM records): (download) 
    >1ohfB (B:)
dnvtaaaqelgqsldanvitfptnvatmpefrswargkldidqdsigwyfkyldpagate
saravgeyskipdglvkfsvdaeireiyneecptvsdasipldgaqwslsiisypmfrta
yfavanvdnkeisldvtndlivwlnnlaswrdvvdsgqwftfsddptwfvrirvlhptyd
lpdptegllrtvsdyrltyksitceanmptlvdqgfwigghyaltpiattqnavegsgfv
hpfnvtrpgiaagvtltwasmppggsapsgdpawipdsttqfqwrhggfdaptgvityti
prgytmqyfdtttnewngfanpddvvtfgqtggaagtnatititaptvtltilatttsaa
nvinfrnldaettaasnrsevplppltfgqtapnnpkieqtlvkdtlgsylvhskmrnpv
fqltpassfgaisftnpgfdrnldlpgfggirdsldvnmstavchfrslskscsivtkty
qgwegvtnvntpfgqfahsgllkndeilcladdlatrltgvygatdnfaaavlafaanml
tsvlkse

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1ohfC (C:)
mdsnsasgkrrsrnvriaantvnvapkqrqargrrarsrannidnvtaaaqelgqsldan
vitfptnvatmpefrswargkldidqdsigwyfkyldpagatesaravgeyskipdglvk
fsvdaeireiyneecptvsdasipldgaqwslsiisypmfrtayfavanvdnkeisldvt
ndlivwlnnlaswrdvvdsgqwftfsddptwfvrirvlhptydlpdptegllrtvsdyrl
tyksitceanmptlvdqgfwigghyaltpiattqnavegsgfvhpfnvtrpgiaagvtlt
wasmppggsapsgdpawipdsttqfqwrhggfdaptgvitytiprgytmqyfdtttnewn
gfanpddvvtfgqtggaagtnatititaptvtltilatttsaanvinfrnldaettaasn
rsevplppltfgqtapnnpkieqtlvkdtlgsylvhskmrnpvfqltpassfgaisftnp
gfdrnldlpgfggirdsldvnmstavchfrslskscsivtktyqgwegvtnvntpfgqfa
hsgllkndeilcladdlatrltgvygatdnfaaavlafaanmltsvlkseattsvikelg
nqatglanqglarlpgllasipgkiaarvrarrdrrraarmnnn

    Sequence, based on observed residues (ATOM records): (download) 
    >1ohfC (C:)
nidnvtaaaqelgqsldanvitfptnvatmpefrswargkldidqdsigwyfkyldpaga
tesaravgeyskipdglvkfsvdaeireiyneecptvsdldgaqwslsiisypmfrtayf
avanvdnkeisldvtndlivwlnnlaswrdvvdsgqwftfsddptwfvrirvlhptydlp
dptegllrtvsdyrltyksitceanmptlvdqgfwigghyaltpiattqnavegsgfvhp
fnvtrpgiaagvtltwasmppggsapsgdpawipdsttqfqwrhggfdaptgvitytipr
gytmqyfdtttnewngfanpddvvtfgqtggaagtnatititaptvtltilatttsaanv
infrnldaettaasnrsevplppltfgqtapnnpkieqtlvkdtlgsylvhskmrnpvfq
ltpassfgaisftnpgfdrnldlpgfggirdsldvnmstavchfrslskscsivtktyqg
wegvtnvntpfgqfahsgllkndeilcladdlatrltgvygatdnfaaavlafaanmlts
vlksetsvikelgnlanqglarlpgllasipgkiaarvrarrdrrraarm

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1ohfD (D:)
mdsnsasgkrrsrnvriaantvnvapkqrqargrrarsrannidnvtaaaqelgqsldan
vitfptnvatmpefrswargkldidqdsigwyfkyldpagatesaravgeyskipdglvk
fsvdaeireiyneecptvsdasipldgaqwslsiisypmfrtayfavanvdnkeisldvt
ndlivwlnnlaswrdvvdsgqwftfsddptwfvrirvlhptydlpdptegllrtvsdyrl
tyksitceanmptlvdqgfwigghyaltpiattqnavegsgfvhpfnvtrpgiaagvtlt
wasmppggsapsgdpawipdsttqfqwrhggfdaptgvitytiprgytmqyfdtttnewn
gfanpddvvtfgqtggaagtnatititaptvtltilatttsaanvinfrnldaettaasn
rsevplppltfgqtapnnpkieqtlvkdtlgsylvhskmrnpvfqltpassfgaisftnp
gfdrnldlpgfggirdsldvnmstavchfrslskscsivtktyqgwegvtnvntpfgqfa
hsgllkndeilcladdlatrltgvygatdnfaaavlafaanmltsvlkseattsvikelg
nqatglanqglarlpgllasipgkiaarvrarrdrrraarmnnn

    Sequence, based on observed residues (ATOM records): (download) 
    >1ohfD (D:)
idnvtaaaqelgqsldanvitfptnvatmpefrswargkldidqdsigwyfkyldpagat
esaravgeyskipdglvkfsvdaeireiyneecptvsdasipldgaqwslsiisypmfrt
ayfavanvdnkeisldvtndlivwlnnlaswrdvvdsgqwftfsddptwfvrirvlhpty
dlpdptegllrtvsdyrltyksitceanmptlvdqgfwigghyaltpiattqnavegsgf
vhpfnvtrpgiaagvtltwasmppggsapsgdpawipdsttqfqwrhggfdaptgvityt
iprgytmqyfdtttnewngfanpddvvtfgqtggaagtnatititaptvtltilatttsa
anvinfrnldaettaasnrsevplppltfgqtapnnpkieqtlvkdtlgsylvhskmrnp
vfqltpassfgaisftnpgfdrnldlpgfggirdsldvnmstavchfrslskscsivtkt
yqgwegvtnvntpfgqfahsgllkndeilcladdlatrltgvygatdnfaaavlafaanm
ltsvlkseattsvikelgnlpgllasipgkiaarvrarrdrrraarm