PDB entry 1nju

View 1nju on RCSB PDB site
Description: Complex structure of HCMV Protease and a peptidomimetic inhibitor
Class: hydrolase/hydrolase inhibitor
Keywords: Protease, Peptidomimetic Inhibitor, Induced-fit, HYDROLASE-HYDROLASE INHIBITOR complex
Deposited on 2003-01-02, released 2003-02-11
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-07-07.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.223
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: assemblin
    Species: Human herpesvirus 5 [TaxId:10359]
    Gene: UL80, APNG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P16753
      • engineered (142)
    Domains in SCOPe 2.06: d1njua_
  • Chain 'B':
    Compound: assemblin
    Species: Human herpesvirus 5 [TaxId:10359]
    Gene: UL80, APNG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P16753
      • engineered (142)
    Domains in SCOPe 2.06: d1njub_
  • Chain 'C':
    Compound: assemblin
    Species: Human herpesvirus 5 [TaxId:10359]
    Gene: UL80, APNG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1njuc_
  • Chain 'D':
    Compound: assemblin
    Species: Human herpesvirus 5 [TaxId:10359]
    Gene: UL80, APNG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P16753 (Start-255)
      • engineered (142)
    Domains in SCOPe 2.06: d1njud_
  • Heterogens: 0FP

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1njuA (A:)
mtmdeqqsqavapvyvggflarydqspdeaelllprdvvehwlhaqgqgqpslsvalpln
inhddtavvghvaamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkv
veflsgsyaglslssrrcddveqatslsgsettpfkhvalcsvgrrrgtlavygrdpewv
tqrfpdltaadrdglraqwqrcgstavdasgdpfrsdsygllgnsvdalyirerlpklry
dkqlvgvteresyvka

    Sequence, based on observed residues (ATOM records): (download) 
    >1njuA (A:)
deqqsqavapvyvggflarydqspdeaelllprdvvehwlhaqlsvalplninhddtavv
ghvaamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkvveflsgsya
glslssrrcddveqttpfkhvalcsvgrrrgtlavygrdpewvtqrfpdltaadrdglra
qwqsgdpfrsdsygllgnsvdalyirerlpklrydkqlvgvteresyvka

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1njuB (B:)
mtmdeqqsqavapvyvggflarydqspdeaelllprdvvehwlhaqgqgqpslsvalpln
inhddtavvghvaamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkv
veflsgsyaglslssrrcddveqatslsgsettpfkhvalcsvgrrrgtlavygrdpewv
tqrfpdltaadrdglraqwqrcgstavdasgdpfrsdsygllgnsvdalyirerlpklry
dkqlvgvteresyvka

    Sequence, based on observed residues (ATOM records): (download) 
    >1njuB (B:)
deqqsqavapvyvggflarydqspdeaelllprdvvehwlhaqsvalplninhddtavvg
hvaamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkvveflsgsyag
lslssrrcddveqttpfkhvalcsvgrrrgtlavygrdpewvtqrfpdltaadrdglraq
wqasgdpfrsdsygllgnsvdalyirerlpklrydkqlvgvteresyvka

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1njuC (C:)
mtmdeqqsqavapvyvggflarydqspdeaelllprdvvehwlhaqgqgqpslsvalpln
inhddtavvghvaamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkv
veflsgsyaglslssrrcddveqatslsgsettpfkhvalcsvgrrrgtlavygrdpewv
tqrfpdltaadrdglraqwqrcgstavdasgdpfrsdsygllgnsvdalyirerlpklry
dkqlvgvteresyvka

    Sequence, based on observed residues (ATOM records): (download) 
    >1njuC (C:)
deqqsqavapvyvggflarydqspdeaelllprdvvehwlhaqlsvalplninhddtavv
ghvaamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkvveflsgsya
glslssrrcddttpfkhvalcsvgrrrgtlavygrdpewvtqrfpdltaadrdglraqwq
sgdpfrsdsygllgnsvdalyirerlpklrydkqlvgvteresyvka

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1njuD (D:)
mtmdeqqsqavapvyvggflarydqspdeaelllprdvvehwlhaqgqgqpslsvalpln
inhddtavvghvaamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkv
veflsgsyaglslssrrcddveqatslsgsettpfkhvalcsvgrrrgtlavygrdpewv
tqrfpdltaadrdglraqwqrcgstavdasgdpfrsdsygllgnsvdalyirerlpklry
dkqlvgvteresyvka

    Sequence, based on observed residues (ATOM records): (download) 
    >1njuD (D:)
deqqsqavapvyvggflarydqspdeaelllprdvvehwlhaqlsvalplninhddtavv
ghvaamqsvrdglfclgcvtsprfleivrrasekselvsrgpvsplqpdkvveflsgsya
glslssrrcddveqttpfkhvalcsvgrrrgtlavygrdpewvtqrfpdltaadrdglra
qwqsgdpfrsdsygllgnsvdalyirerlpklrydkqlvgvteresyvka