PDB entry 1l3b

View 1l3b on RCSB PDB site
Description: mt0146, the precorrin-6y methyltransferase (cbit) homolog from m. thermoautotrophicum, c2 spacegroup w/ long cell
Class: transferase, lyase
Keywords: structural genomics, beta barrel, rossmann fold, tetramer, methyltransferase, decarboxylase, structure-based function assignment, transferase, lyase
Deposited on 2002-02-26, released 2002-11-27
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.246
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Precorrin-6y methyltransferase/putative decarboxylase
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: MTH146
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26249 (0-End)
      • modified residue (0)
      • modified residue (18)
      • modified residue (25)
      • modified residue (72)
      • modified residue (86)
      • modified residue (143)
      • modified residue (171-172)
    Domains in SCOPe 2.07: d1l3ba_
  • Chain 'B':
    Compound: Precorrin-6y methyltransferase/putative decarboxylase
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: MTH146
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26249 (0-End)
      • modified residue (0)
      • modified residue (18)
      • modified residue (25)
      • modified residue (72)
      • modified residue (86)
      • modified residue (143)
      • modified residue (171-172)
    Domains in SCOPe 2.07: d1l3bb_
  • Chain 'C':
    Compound: Precorrin-6y methyltransferase/putative decarboxylase
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: MTH146
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26249 (0-End)
      • modified residue (0)
      • modified residue (18)
      • modified residue (25)
      • modified residue (72)
      • modified residue (86)
      • modified residue (143)
      • modified residue (171-172)
    Domains in SCOPe 2.07: d1l3bc_
  • Chain 'D':
    Compound: Precorrin-6y methyltransferase/putative decarboxylase
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: MTH146
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26249 (0-End)
      • modified residue (0)
      • modified residue (18)
      • modified residue (25)
      • modified residue (72)
      • modified residue (86)
      • modified residue (143)
      • modified residue (171-172)
    Domains in SCOPe 2.07: d1l3bd_
  • Chain 'E':
    Compound: Precorrin-6y methyltransferase/putative decarboxylase
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: MTH146
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26249 (0-End)
      • modified residue (0)
      • modified residue (18)
      • modified residue (25)
      • modified residue (72)
      • modified residue (86)
      • modified residue (143)
      • modified residue (171-172)
    Domains in SCOPe 2.07: d1l3be_
  • Chain 'F':
    Compound: Precorrin-6y methyltransferase/putative decarboxylase
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: MTH146
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26249 (0-End)
      • modified residue (0)
      • modified residue (18)
      • modified residue (25)
      • modified residue (72)
      • modified residue (86)
      • modified residue (143)
      • modified residue (171-172)
    Domains in SCOPe 2.07: d1l3bf_
  • Chain 'G':
    Compound: Precorrin-6y methyltransferase/putative decarboxylase
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: MTH146
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26249 (0-End)
      • modified residue (0)
      • modified residue (18)
      • modified residue (25)
      • modified residue (72)
      • modified residue (86)
      • modified residue (143)
      • modified residue (171-172)
    Domains in SCOPe 2.07: d1l3bg_
  • Chain 'H':
    Compound: Precorrin-6y methyltransferase/putative decarboxylase
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: MTH146
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26249 (0-End)
      • modified residue (0)
      • modified residue (18)
      • modified residue (25)
      • modified residue (72)
      • modified residue (86)
      • modified residue (143)
      • modified residue (171-172)
    Domains in SCOPe 2.07: d1l3bh_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1l3bA (A:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgvshenkd

    Sequence, based on observed residues (ATOM records): (download) 
    >1l3bA (A:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1l3bB (B:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgvshenkd

    Sequence, based on observed residues (ATOM records): (download) 
    >1l3bB (B:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1l3bC (C:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgvshenkd

    Sequence, based on observed residues (ATOM records): (download) 
    >1l3bC (C:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1l3bD (D:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgvshenkd

    Sequence, based on observed residues (ATOM records): (download) 
    >1l3bD (D:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgv

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1l3bE (E:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgvshenkd

    Sequence, based on observed residues (ATOM records): (download) 
    >1l3bE (E:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgv

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1l3bF (F:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgvshenkd

    Sequence, based on observed residues (ATOM records): (download) 
    >1l3bF (F:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgv

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1l3bG (G:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgvshenkd

    Sequence, based on observed residues (ATOM records): (download) 
    >1l3bG (G:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgv

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1l3bH (H:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgvshenkd

    Sequence, based on observed residues (ATOM records): (download) 
    >1l3bH (H:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgv