PDB entry 1i5l

View 1i5l on RCSB PDB site
Description: crystal structure of an sm-like protein (af-sm1) from archaeoglobus fulgidus complexed with short poly-u RNA
Class: RNA binding protein/RNA
Keywords: snrnp, sm, core snrnp domain, RNA binding protein, single-stranded RNA binding protein, RNA binding protein/RNA complex
Deposited on 2001-02-28, released 2001-08-28
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: 0.225
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5la_
  • Chain 'B':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5lb_
  • Chain 'C':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5lc_
  • Chain 'D':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5ld_
  • Chain 'E':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5le_
  • Chain 'F':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5lf_
  • Chain 'G':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5lg_
  • Chain 'H':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5lh_
  • Chain 'I':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5li_
  • Chain 'J':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5lj_
  • Chain 'K':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5lk_
  • Chain 'L':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5ll_
  • Chain 'M':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5lm_
  • Chain 'N':
    Compound: putative snrnp sm-like protein af-sm1
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF0875
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1i5ln_
  • Chain 'U':
    Compound: 5'-r(*up*up*u)-3'
  • Chain 'Y':
    Compound: 5'-r(*up*up*u)-3'
  • Heterogens: URI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1i5lA (A:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lA (A:)
prpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsvvi
rgdtvvfvspa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1i5lB (B:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lB (B:)
prpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsvvi
rgdtvvfvspapg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1i5lC (C:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lC (C:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspap

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1i5lD (D:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lD (D:)
pprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsvv
irgdtvvfvspap

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1i5lE (E:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lE (E:)
prpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsvvi
rgdtvvfvspa

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1i5lF (F:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lF (F:)
prpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsvvi
rgdtvvfvspap

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1i5lG (G:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lG (G:)
prpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsvvi
rgdtvvfvspap

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1i5lH (H:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lH (H:)
prpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsvvi
rgdtvvfvspap

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1i5lI (I:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lI (I:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspa

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1i5lJ (J:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lJ (J:)
prpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsvvi
rgdtvvfvspap

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1i5lK (K:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lK (K:)
prpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsvvi
rgdtvvfvspap

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >1i5lL (L:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lL (L:)
prpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsvvi
rgdtvvfvspap

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1i5lM (M:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lM (M:)
pprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsvv
irgdtvvfvspa

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >1i5lN (N:)
mpprpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsv
virgdtvvfvspapgge

    Sequence, based on observed residues (ATOM records): (download) 
    >1i5lN (N:)
prpldvlnrslkspvivrlkggrefrgtldgydihmnlvlldaeeiqngevvrkvgsvvi
rgdtvvfvspa

  • Chain 'U':
    No sequence available.

  • Chain 'Y':
    No sequence available.