PDB entry 1h9d

View 1h9d on RCSB PDB site
Description: aml1/cbf-beta/DNA complex
Class: transcription factor
Keywords: transcription factor
Deposited on 2001-03-07, released 2001-03-31
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.237
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: core-binding factor alpha subunit1
    Species: Homo sapiens [TaxId:9606]
    Gene: AML1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1h9da_
  • Chain 'B':
    Compound: core-binding factor cbf-beta
    Species: Homo sapiens [TaxId:9606]
    Gene: CBFB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1h9db_
  • Chain 'C':
    Compound: core-binding factor alpha subunit1
    Species: Homo sapiens [TaxId:9606]
    Gene: AML1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1h9dc_
  • Chain 'D':
    Compound: core-binding factor cbf-beta
    Species: Homo sapiens [TaxId:9606]
    Gene: CBFB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1h9dd_
  • Chain 'E':
    Compound: DNA (5'-(*gp*tp*tp*gp*cp*gp*gp*tp*tp*g)-3')
  • Chain 'F':
    Compound: DNA (5'-(*cp*ap*ap*cp*cp*gp*cp*ap*ap*c)-3')
  • Chain 'G':
    Compound: DNA (5'-(*gp*tp*tp*gp*cp*gp*gp*tp*tp*g)-3')
  • Chain 'H':
    Compound: DNA (5'-(*cp*ap*ap*cp*cp*gp*cp*ap*ap*c)-3')
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1h9dA (A:)
smvevladhpgelvrtdspnflcsvlpthwrcnktlpiafkvvalgdvpdgtlvtvmagn
denysaelrnataamknqvarfndlrfvgrsgrgksftltitvftnppqvatyhraikit
vdgpreprrhrqkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1h9dA (A:)
vladhpgelvrtdspnflcsvlpthwrcnktlpiafkvvalgdvpdgtlvtvmagndeny
saelrnataamknqvarfndlrfvgrsgrgksftltitvftnppqvatyhraikitvdgp
reprr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1h9dB (B:)
prvvpdqrskfeneeffrklsreceikytgfrdrpheerqarfqnacrdgrseiafvatg
tnlslqffpaswqgeqrqtpsreyvdlereagkvylkapmilngvcviwkgwidlqrldg
mgclefdeeraqqe

    Sequence, based on observed residues (ATOM records): (download) 
    >1h9dB (B:)
prvvpdqrskfeneeffrklsreceikytgfrdrpheerqarfqnacrdgrseiafvatg
tnlslqffptpsreyvdlereagkvylkapmilngvcviwkgwidlqrldgmgclefdee
raqqe

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1h9dC (C:)
smvevladhpgelvrtdspnflcsvlpthwrcnktlpiafkvvalgdvpdgtlvtvmagn
denysaelrnataamknqvarfndlrfvgrsgrgksftltitvftnppqvatyhraikit
vdgpreprrhrqkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1h9dC (C:)
vladhpgelvrtdspnflcsvlpthwrcnktlpiafkvvalgdvpdgtlvtvmagndeny
saelrnataamknqvarfndlrfvgrsgrgksftltitvftnppqvatyhraikitvdgp
reprr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1h9dD (D:)
prvvpdqrskfeneeffrklsreceikytgfrdrpheerqarfqnacrdgrseiafvatg
tnlslqffpaswqgeqrqtpsreyvdlereagkvylkapmilngvcviwkgwidlqrldg
mgclefdeeraqqe

    Sequence, based on observed residues (ATOM records): (download) 
    >1h9dD (D:)
prvvpdqrskfeneeffrklsreceikytgfrdrpheerqarfqnacrdgrseiafvatg
tnlslqffpaswqtpsreyvdlereagkvylkapmilngvcviwkgwidlqrldgmgcle
fdeeraqqe

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.