call loadScript ..\..\js\core\package.js
call loadScript ..\..\js\core\core.z.js -- required by ClazzNode
call loadScript ..\..\js\J\awtjs2d\WebOutputChannel.js
Jmol JavaScript applet jmol_object__994376697105645__ initializing
getValue debug = null
getValue logLevel = null
getValue allowjavascript = null
AppletRegistry.checkIn(jmol_object__994376697105645__)
call loadScript ..\..\js\core\corestate.z.js
viewerOptions:
{ "name":"jmol_object","applet":true,"documentBase":"http://scop.berkeley.edu/astral/jmolview/?context=1&id=d3qk2a1","platform":"J.awtjs2d.Platform","fullName":"jmol_object__994376697105645__","display":"jmol_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol.MyStatusListener object]","codeBase":"http://scop.berkeley.edu/astral/jmolview/../../js/j2s/","syncId":"994376697105645","bgcolor":"white" }
(C) 2012 Jmol Development
Jmol Version: 13.2.7 $Date: 2013-10-01 11:35:15 -0500 (Tue, 01 Oct 2013) $
java.vendor: j2s
java.version: 0.0
os.name: j2s
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmol_object (signed)
starting HoverWatcher_1
getValue emulate = null
defaults = "Jmol"
getValue boxbgcolor = null
getValue bgcolor = white
backgroundColor = "white"
getValue ANIMFRAMECallback = null
getValue APPLETREADYCallback = Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
getValue ATOMMOVEDCallback = null
getValue CLICKCallback = null
getValue ECHOCallback = null
getValue ERRORCallback = null
getValue EVALCallback = null
getValue HOVERCallback = null
getValue LOADSTRUCTCallback = null
getValue MEASURECallback = null
getValue MESSAGECallback = null
getValue MINIMIZATIONCallback = null
getValue PICKCallback = null
getValue RESIZECallback = null
getValue SCRIPTCallback = null
getValue SYNCCallback = null
getValue STRUCTUREMODIFIEDCallback = null
getValue doTranslate = null
language=en_US
getValue popupMenu = null
getValue script = null
Jmol applet jmol_object__994376697105645__ ready
call loadScript ..\..\js\core\corescript.z.js
call loadScript ..\..\js\J\script\FileLoadThread.js
starting QueueThread0_2
script 1 started
FileManager.getAtomSetCollectionFromFile(../../pdbdata/110223/files/hash/qk/pdb3qk2.ent.gz)
starting HoverWatcher_3
FileManager opening 1 http://scop.berkeley.edu/pdbdata/110223/files/hash/qk/pdb3qk2.ent.gz
call loadScript ..\..\js\core\corezip.z.js
The Resolver thinks Pdb
call loadScript ..\..\js\core\corebio.z.js
DNA BINDING PROTEIN 31-JAN-11 3QK2
STRUCTURE-BASED ANALYSIS OF THE INTERACTION BETWEEN THE SIMIAN VIRUS
40 T-ANTIGEN ORIGIN BINDING DOMAIN AND SINGLE-STRANDED DNA
call loadScript ..\..\js\core\coresym.z.js
biomolecule 1: number of transforms: 1
Setting space group name to C 2 2 21
Time for openFile(../../pdbdata/110223/files/hash/qk/pdb3qk2.ent.gz): 2571 ms
reading 1241 atoms
ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: AB
Default Van der Waals type for model set to Jmol
1241 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
DNA BINDING PROTEIN 31-JAN-11 3QK2
STRUCTURE-BASED ANALYSIS OF THE INTERACTION BETWEEN THE SIMIAN VIRUS
40 T-ANTIGEN ORIGIN BINDING DOMAIN AND SINGLE-STRANDED DNA
0 atoms hidden
1241 atoms selected
1109 atoms selected
129 atoms hidden
1087 atoms selected
Script completed
Jmol script terminated
