Lineage for d3qk2a1 (3qk2 A:131-260)

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2963164Fold d.89: Origin of replication-binding domain, RBD-like [55463] (1 superfamily)
    alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325
  4. 2963165Superfamily d.89.1: Origin of replication-binding domain, RBD-like [55464] (6 families) (S)
  5. 2963166Family d.89.1.1: The origin DNA-binding domain of SV40 T-antigen [55465] (2 proteins)
  6. 2963167Protein The origin DNA-binding domain of SV40 T-antigen [55466] (2 species)
  7. 2963174Species Simian virus 40, Sv40 [TaxId:10633] [55467] (10 PDB entries)
  8. 2963177Domain d3qk2a1: 3qk2 A:131-260 [184457]
    Other proteins in same PDB: d3qk2a2, d3qk2a3
    automated match to d1tbda_
    complexed with scn

Details for d3qk2a1

PDB Entry: 3qk2 (more details), 1.64 Å

PDB Description: Structure-Based Analysis of the Interaction between the Simian Virus 40 T-Antigen Origin Binding Domain and Single-Stranded DNA
PDB Compounds: (A:) large t antigen

SCOPe Domain Sequences for d3qk2a1:

Sequence, based on SEQRES records: (download)

>d3qk2a1 d.89.1.1 (A:131-260) The origin DNA-binding domain of SV40 T-antigen {Simian virus 40, Sv40 [TaxId: 10633]}
kvedpkdfpsellsflshavfsnrtlacfaiyttkekaallykkimekysvtfisrhnsy
nhnilffltphrhrvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpg
glkehdfnpe

Sequence, based on observed residues (ATOM records): (download)

>d3qk2a1 d.89.1.1 (A:131-260) The origin DNA-binding domain of SV40 T-antigen {Simian virus 40, Sv40 [TaxId: 10633]}
kvedpkdfpsellsflshafsnrtlacfaiyttkekaallykkimekysvtfisrhnsyn
hnilffltphrhrvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgg
lkehdfnpe

SCOPe Domain Coordinates for d3qk2a1:

Click to download the PDB-style file with coordinates for d3qk2a1.
(The format of our PDB-style files is described here.)

Timeline for d3qk2a1: