SCOPe 2.04: Domain d1s9ga1: 1s9g A:430-543

Lineage for d1s9ga1 (1s9g A:430-543)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (15 families)
   consists of one domain of this fold

5. Family c.55.3.1: Ribonuclease H [53099] (5 proteins)

6. Protein HIV RNase H (Domain of reverse transcriptase) [53105] (3 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [53106] (102 PDB entries)
   Uniprot P04585 159-692 # chain A coverage; chain B is shorter: 162-582 ! Uniprot P03366 186-725 # chain A coverage; chain B coverage: 156-584 ! Uniprot P04585 158-698 # chain A coverage; chain B is shorter: 159-595

8. Domain d1s9ga1: 1s9g A:430-543 [98755]
   Other proteins in same PDB: d1s9ga2, d1s9gb_
   complexed with abz

Details for d1s9ga1

PDB Entry: 1s9g, 2.8 Å

PDB Description: crystal structure of hiv-1 reverse transcriptase (rt) in complex with janssen-r120394.

PDB Compounds: (A:) POL polyprotein [Contains: Reverse transcriptase]

SCOPe Domain Sequences for d1s9ga1:

Sequence; same for both SEQRES and ATOM records:

>d1s9ga1 c.55.3.1 (A:430-543) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
ekepivgaetfyvdgaanretklgkagyvtnkgrqkvvpltnttnqktelqaiylalqds
glevnivtdsqyalgiiqaqpdkseselvnqiieqlikkekvylawvpahkgig

Timeline for d1s9ga1:

• d1s9ga1 first appeared in SCOP 1.67
  
• d1s9ga1 appears in SCOPe 2.03
  
• d1s9ga1 appears in SCOPe 2.05
  
• d1s9ga1 appears in the current release, SCOPe 2.08