Lineage for d1rurl1 (1rur L:1-107)

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2352459Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2352460Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2352461Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2353665Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2353891Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (132 PDB entries)
    Uniprot P01631 #KV2G_MOUSE Ig kappa chain V-II region 26-10; 79% sequence identity ! Uniprot P06310 # KV2F_HUMAN IG KAPPA CHAIN V-II REGION RPMI 6410 PRECURSOR ! Uniprot P03976 # KV2E_MOUSE (P03976) Ig kappa chain V-II region 17S29.1 ! Uniprot P01642 21-115 # ! KV2G_MOUSE IG KAPPA CHAIN V-II REGION 26-10
  8. 2353899Domain d1rurl1: 1rur L:1-107 [97881]
    Other proteins in same PDB: d1rurh1, d1rurh2, d1rurl2
    part of Diels-Alder catalytic Fab 13G5
    complexed with zn

Details for d1rurl1

PDB Entry: 1rur (more details), 1.5 Å

PDB Description: crystal structure (i) of native diels-alder antibody 13g5 fab at ph 8.0 with a data set collected at ssrl beamline 9-1.
PDB Compounds: (L:) immunoglobulin 13G5, light chain

SCOPe Domain Sequences for d1rurl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1rurl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}
divltqaafsnpvtlgasasiscrssksllnsngiihmywylqkpgqspqlliyqmskla
sgapdrfsgsgsgtdftlrisrveaedvgvyycaqnlelpytfgggtkleik

SCOPe Domain Coordinates for d1rurl1:

Click to download the PDB-style file with coordinates for d1rurl1.
(The format of our PDB-style files is described here.)

Timeline for d1rurl1:

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Domains from same chain:
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d1rurl2