SCOPe 2.08: Domain d1rkga_: 1rkg A:

Lineage for d1rkga_ (1rkg A:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
   multihelical; 3 layers or orthogonally packed helices

4. Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families)

5. Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 proteins)

6. Protein Vitamin D nuclear receptor [48528] (2 species)

7. Species Norway rat (Rattus norvegicus) [TaxId:10116] [101432] (25 PDB entries)

8. Domain d1rkga_: 1rkg A: [97611]
   complexed with vd1

Details for d1rkga_

PDB Entry: 1rkg, 1.9 Å

PDB Description: crystal structure of the rat vitamin d receptor ligand binding domain complexed with 2mbisp and a synthetic peptide containing the nr2 box of drip 205

PDB Compounds: (A:) Vitamin D3 receptor

SCOPe Domain Sequences for d1rkga_:

Sequence, based on SEQRES records:

>d1rkga_ a.123.1.1 (A:) Vitamin D nuclear receptor {Norway rat (Rattus norvegicus) [TaxId: 10116]}
klseeqqhiiailldahhktydptyadfrdfrppvrmdgstgsvtldlsplsmlphladl
vsysiqkvigfakmipgfrdltsddqivllkssaievimlrsnqsftmddmswdcgsqdy
kydvtdvskaghtlelieplikfqvglkklnlheeehvllmaicivspdrpgvqdaklve
aiqdrlsntlqtyircrhpppgshqlyakmiqkladlrslneehskqyrslsfqpensmk
ltplvlevfgne

Sequence, based on observed residues (ATOM records):

>d1rkga_ a.123.1.1 (A:) Vitamin D nuclear receptor {Norway rat (Rattus norvegicus) [TaxId: 10116]}
klseeqqhiiailldahhktydptyadfrdfrppvrmsplsmlphladlvsysiqkvigf
akmipgfrdltsddqivllkssaievimlrsnqsftmddmswdcgsqdykydvtdvskag
htlelieplikfqvglkklnlheeehvllmaicivspdrpgvqdaklveaiqdrlsntlq
tyircrhpppgshqlyakmiqkladlrslneehskqyrslsfqpensmkltplvlevfgn
e

Timeline for d1rkga_:

• d1rkga_ first appeared in SCOP 1.67
  
• d1rkga_ appears in SCOPe 2.07