Lineage for d1qygl1 (1qyg L:1-107)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2021374Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2021375Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2021376Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2022563Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2022786Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (132 PDB entries)
    Uniprot P01631 #KV2G_MOUSE Ig kappa chain V-II region 26-10; 79% sequence identity ! Uniprot P06310 # KV2F_HUMAN IG KAPPA CHAIN V-II REGION RPMI 6410 PRECURSOR ! Uniprot P03976 # KV2E_MOUSE (P03976) Ig kappa chain V-II region 17S29.1 ! Uniprot P01642 21-115 # ! KV2G_MOUSE IG KAPPA CHAIN V-II REGION 26-10
  8. 2022797Domain d1qygl1: 1qyg L:1-107 [96591]
    Other proteins in same PDB: d1qygh1, d1qygh2, d1qygl2
    part of anti-cocaine Fab M82G2
    complexed with bcg

Details for d1qygl1

PDB Entry: 1qyg (more details), 1.81 Å

PDB Description: anti-cocaine antibody m82g2 complexed with benzoylecgonine
PDB Compounds: (L:) Fab M82G2, Light chain

SCOPe Domain Sequences for d1qygl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1qygl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}
divmtqaapsvpvtpgesvsiscrssksllhsngytylhwflqrpgqspqlliyrvsnla
sgvpdrfsgsgsgtaftlrfsrveaedvgvyycmqhleypftfgsgtkleik

SCOPe Domain Coordinates for d1qygl1:

Click to download the PDB-style file with coordinates for d1qygl1.
(The format of our PDB-style files is described here.)

Timeline for d1qygl1:

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Domains from same chain:
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d1qygl2