Lineage for d1q9va1 (1q9v A:1-107)

  1. Root: SCOP 1.75
  2. 781541Class b: All beta proteins [48724] (174 folds)
  3. 781542Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 781543Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 781544Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (32 proteins)
  6. 782637Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 783027Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] [88525] (36 PDB entries)
  8. 783032Domain d1q9va1: 1q9v A:1-107 [96316]
    Other proteins in same PDB: d1q9va2, d1q9vb1, d1q9vb2
    part of Fab s25-2
    complexed with kdo, mg, zn

Details for d1q9va1

PDB Entry: 1q9v (more details), 1.73 Å

PDB Description: S25-2- Kdo monosaccharide complex
PDB Compounds: (A:) S25-2 Fab (IgG1k) light chain

SCOP Domain Sequences for d1q9va1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1q9va1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

SCOP Domain Coordinates for d1q9va1:

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Timeline for d1q9va1:

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