Lineage for d1q9tb1 (1q9t B:1-111)

  1. Root: SCOP 1.71
  2. 546417Class b: All beta proteins [48724] (149 folds)
  3. 546418Fold b.1: Immunoglobulin-like beta-sandwich [48725] (25 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 546419Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 546420Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (28 proteins)
  6. 546556Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 546690Species Mouse (Mus musculus), cluster 1 [TaxId:10090] [88548] (42 PDB entries)
  8. 546698Domain d1q9tb1: 1q9t B:1-111 [96312]
    Other proteins in same PDB: d1q9ta1, d1q9ta2, d1q9tb2
    part of Fab s25-2
    complexed with kda, kdo, mg, zn

Details for d1q9tb1

PDB Entry: 1q9t (more details), 1.74 Å

PDB Description: S25-2- a(2-4)Kdo disaccharide complex

SCOP Domain Sequences for d1q9tb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1q9tb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1}
evklvesggglvqsggslrlscatsgftftdyymswvrqppgkalewlgfirnkangytt
eyspsvkgrftisrdnsqsilylqmntlraedsatyycardhdgyyerfsywgqgtlvtv
sa

SCOP Domain Coordinates for d1q9tb1:

Click to download the PDB-style file with coordinates for d1q9tb1.
(The format of our PDB-style files is described here.)

Timeline for d1q9tb1:

View in 3D
Domains from same chain:
(mouse over for more information)
d1q9tb2