Lineage for d1pz5a1 (1pz5 A:1-107)

  1. Root: SCOP 1.71
  2. 546417Class b: All beta proteins [48724] (149 folds)
  3. 546418Fold b.1: Immunoglobulin-like beta-sandwich [48725] (25 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 546419Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 546420Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (28 proteins)
  6. 547289Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 547441Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (126 PDB entries)
  8. 547460Domain d1pz5a1: 1pz5 A:1-107 [95401]
    Other proteins in same PDB: d1pz5a2, d1pz5b1, d1pz5b2
    part of Fab Sya/J6

Details for d1pz5a1

PDB Entry: 1pz5 (more details), 1.8 Å

PDB Description: Structural basis of peptide-carbohydrate mimicry in an antibody combining site

SCOP Domain Sequences for d1pz5a1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1pz5a1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1}
dvvltqtplslpvrlgdqasiscrssqsllhsdgntylhwylqkpgqspklliykvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgvyfcsqtthvptfgggtkleik

SCOP Domain Coordinates for d1pz5a1:

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(The format of our PDB-style files is described here.)

Timeline for d1pz5a1:

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Domains from same chain:
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d1pz5a2