SCOPe 2.02: Domain d1pp8u_: 1pp8 U:

Lineage for d1pp8u_ (1pp8 U:)

1. Root: SCOPe 2.02

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.5: "Winged helix" DNA-binding domain [46785] (85 families)
   contains a small beta-sheet (wing)

5. Family a.4.5.44: 39 kda initiator binding protein, IBP39, N-terminal domain [101045] (1 protein)

6. Protein 39 kda initiator binding protein, IBP39, N-terminal domain [101046] (1 species)

7. Species Trichomonas vaginalis [TaxId:5722] [101047] (2 PDB entries)

8. Domain d1pp8u_: 1pp8 U: [94978]
   protein/DNA complex; complexed with so4

Details for d1pp8u_

PDB Entry: 1pp8, 3.05 Å

PDB Description: crystal structure of the T. vaginalis IBP39 Initiator binding domain (IBD) bound to the alpha-SCS Inr element

PDB Compounds: (U:) 39 kDa initiator binding protein

SCOPe Domain Sequences for d1pp8u_:

Sequence; same for both SEQRES and ATOM records:

>d1pp8u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}
dsndleasftsrlppeivaalkrkssrdpnsrfprklhmlltylasnpqleeeiglswis
dtefkmkkknvalvmgiklntlnvnlrdlafeqlqhdkggwtqwkrsgftr

Timeline for d1pp8u_:

• d1pp8u_ first appeared in SCOP 1.67
  
• d1pp8u_ appears in SCOPe 2.01
  
• d1pp8u_ appears in SCOPe 2.03
  
• d1pp8u_ appears in the current release, SCOPe 2.08