SCOPe 2.08: Domain d1olzb2: 1olz B:3-480

Lineage for d1olzb2 (1olz B:3-480)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.69: 7-bladed beta-propeller [50964] (15 superfamilies)
   consists of seven 4-stranded beta-sheet motifs; meander

4. Superfamily b.69.12: Sema domain [101912] (1 family)
   irregular 7-bladed beta-propeller with a large insertion in the fifth blade
   automatically mapped to Pfam PF01403

5. Family b.69.12.1: Sema domain [101913] (3 proteins)
   Pfam PF01403

6. Protein Semaphorin 4d [101914] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [101915] (2 PDB entries)

8. Domain d1olzb2: 1olz B:3-480 [93345]
   Other proteins in same PDB: d1olza1, d1olza3, d1olzb1, d1olzb3

Details for d1olzb2

PDB Entry: 1olz, 2 Å

PDB Description: the ligand-binding face of the semaphorins revealed by the high resolution crystal structure of sema4d

PDB Compounds: (B:) semaphorin 4d

SCOPe Domain Sequences for d1olzb2:

Sequence, based on SEQRES records:

>d1olzb2 b.69.12.1 (B:3-480) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}
fapipritwehrevhlvqfhepdiynysalllsedkdtlyigareavfavnalnisekqh
evywkvsedkkakcaekgkskqteclnyirvlqplsatslyvcgtnafqpacdhlnltsf
kflgknedgkgrcpfdpahsytsvmvdgelysgtsynflgsepiisrnsshsplrteyai
pwlnepsfvfadvirkspdspdgeddrvyffftevsveyefvfrvlipriarvckgdqgg
lrtlqkkwtsflkarlicsrpdsglvfnvlrdvfvlrspglkvpvfyalftpqlnnvgls
avcaynlstaeevfshgkymqsttveqshtkwvryngpvpkprpgacidsearaanytss
lnlpdktlqfvkdhplmddsvtpidnrprlikkdvnytqivvdrtqaldgtvydvmfvst
drgalhkaislehavhiieetqlfqdfepvqtlllsskkgnrfvyagsnsgvvqapla

Sequence, based on observed residues (ATOM records):

>d1olzb2 b.69.12.1 (B:3-480) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}
fapipritwehrevhlvqfhepdiynysalllsedkdtlyigareavfavnalnisekqh
evywkvsedkkakcaekgkskqteclnyirvlqplsatslyvcgtnafqpacdhlnltsf
kflgknedgkgrcpfdpahsytsvmvdgelysgtsynflgsepiisrnsshsplrteyai
pwlnepsfvfadvirkspgeddrvyffftevsveyefvfrvlipriarvckgdqgglrtl
qkkwtsflkarlicsrpdsglvfnvlrdvfvlrspglkvpvfyalftpqlnnvglsavca
ynlstaeevfshgkymqsttveqshtkwvryngpvpkprpgacidsearaanytsslnlp
dktlqfvkdhplmddsvtpidnrprlikkdvnytqivvdrtqaldgtvydvmfvstdrga
lhkaislehavhiieetqlfqdfepvqtlllsskkgnrfvyagsnsgvvqapla

Timeline for d1olzb2:

• d1olzb2 first appeared in SCOP 1.67
  
• d1olzb2 appears in SCOPe 2.07