SCOPe 2.08: Domain d1ojma1: 1ojm A:174-540

Lineage for d1ojma1 (1ojm A:174-540)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
   multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies

4. Superfamily a.102.3: Chondroitin AC/alginate lyase [48230] (2 families)
   incomplete toroid

5. Family a.102.3.2: Hyaluronate lyase-like catalytic, N-terminal domain [48234] (5 proteins)

6. Protein Hyaluronate lyase [48237] (2 species)

7. Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [48238] (18 PDB entries)
   Uniprot Q54873 287-1007

8. Domain d1ojma1: 1ojm A:174-540 [93134]
   Other proteins in same PDB: d1ojma2, d1ojma3, d1ojma4
   complexed with so4

Details for d1ojma1

PDB Entry: 1ojm, 1.78 Å

PDB Description: specificity and mechanism of streptococcus pneumoniae hyaluronate lyase: complex with unsulphated chondroitin disaccharide

PDB Compounds: (A:) hyaluronate lyase

SCOPe Domain Sequences for d1ojma1:

Sequence; same for both SEQRES and ATOM records:

>d1ojma1 a.102.3.2 (A:174-540) Hyaluronate lyase {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
ytdrlddwngiiagnqyydskndqmaklnqelegkvadslssissqadriylwekfsnyk
tsanltatyrkleemakqvtnpssryyqdetvvrtvrdsmewmhkhvynseksivgnwwd
yeigtprainntlslmkeyfsdeeikkytdviekfvpdpehfrkttdnpfkalggnlvdm
grvkviagllrkddqeisstirsieqvfklvdqgegfyqdgsyidhtnvaytgaygnvli
dglsqllpviqktknpidkdkmqtmyhwidksfapllvngelmdmsrgrsisranseghv
aavevlrgihriadmsegetkqrlqslvktivqsdsyydvfknlktykdislmqsllsda
gvasvpr

Timeline for d1ojma1:

• d1ojma1 first appeared in SCOP 1.67
  
• d1ojma1 appears in SCOPe 2.07