SCOPe 2.02: Domain d1odub2: 1odu B:7-356

Lineage for d1odub2 (1odu B:7-356)

1. Root: SCOPe 2.02

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.11: Putative alpha-L-fucosidase, catalytic domain [102079] (1 protein)
   glycosyl hydrolase family 29; contains additional beta-barrel with a topological similarity to the C-terminal domain of alpha amylases

6. Protein Putative alpha-L-fucosidase, catalytic domain [102080] (1 species)

7. Species Thermotoga maritima [TaxId:2336] [102081] (3 PDB entries)
   TM0306

8. Domain d1odub2: 1odu B:7-356 [92787]
   Other proteins in same PDB: d1odua1, d1odub1
   complexed with ful

Details for d1odub2

PDB Entry: 1odu, 2.8 Å

PDB Description: crystal structure of thermotoga maritima alpha-fucosidase in complex with fucose

PDB Compounds: (B:) putative alpha-l-fucosidase

SCOPe Domain Sequences for d1odub2:

Sequence, based on SEQRES records:

>d1odub2 c.1.8.11 (B:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]}
rykpdweslrehtvpkwfdkakfgifihwgiysvpgwatptgelgkvpmdawffqnpyae
wyenslrikesptweyhvktygenfeyekfadlftaekwdpqewadlfkkagakyviptt
khhdgfclwgtkytdfnsvkrgpkrdlvgdlakavreaglrfgvyysggldwrfttepir
ypedlsyirpntyeyadyaykqvmelvdlylpdvlwndmgwpekgkedlkylfayyynkh
pegsvndrwgvphwdfktaeyhvnypgdlpgykweftrgiglsfgynrnegpehmlsveq
lvytlvdvvskggnlllnvgpkgdgtipdlqkerllglgewlrkygdaiy

Sequence, based on observed residues (ATOM records):

>d1odub2 c.1.8.11 (B:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]}
rykpdweslrehtvpkwfdkakfgifihwgiysvpgwatpdawffqnpyaewyenslrik
esptweyhvktygenfeyekfadlftaekwdpqewadlfkkagakyvipttkhhdgfclw
gtkytdfnsvkrgpkrdlvgdlakavreaglrfgvyysggldwrfttepirypedlsyir
pntyeyadyaykqvmelvdlylpdvlwndmgwpekgkedlkylfayyynkhpegsvndrw
gvphwdfktaelpgykweftrgiglsfgynrnegpehmlsveqlvytlvdvvskggnlll
nvgpkgdgtipdlqkerllglgewlrkygdaiy

Timeline for d1odub2:

• d1odub2 first appeared in SCOP 1.67
  
• d1odub2 appears in SCOPe 2.01
  
• d1odub2 appears in SCOPe 2.03
  
• d1odub2 appears in the current release, SCOPe 2.08