Lineage for d1odub2 (1odu B:7-356)

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 968086Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 969862Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 971471Family c.1.8.11: Putative alpha-L-fucosidase, catalytic domain [102079] (1 protein)
    glycosyl hydrolase family 29; contains additional beta-barrel with a topological similarity to the C-terminal domain of alpha amylases
  6. 971472Protein Putative alpha-L-fucosidase, catalytic domain [102080] (1 species)
  7. 971473Species Thermotoga maritima [TaxId:2336] [102081] (3 PDB entries)
    TM0306
  8. 971479Domain d1odub2: 1odu B:7-356 [92787]
    Other proteins in same PDB: d1odua1, d1odub1
    complexed with ful

Details for d1odub2

PDB Entry: 1odu (more details), 2.8 Å

PDB Description: crystal structure of thermotoga maritima alpha-fucosidase in complex with fucose
PDB Compounds: (B:) putative alpha-l-fucosidase

SCOPe Domain Sequences for d1odub2:

Sequence, based on SEQRES records: (download)

>d1odub2 c.1.8.11 (B:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]}
rykpdweslrehtvpkwfdkakfgifihwgiysvpgwatptgelgkvpmdawffqnpyae
wyenslrikesptweyhvktygenfeyekfadlftaekwdpqewadlfkkagakyviptt
khhdgfclwgtkytdfnsvkrgpkrdlvgdlakavreaglrfgvyysggldwrfttepir
ypedlsyirpntyeyadyaykqvmelvdlylpdvlwndmgwpekgkedlkylfayyynkh
pegsvndrwgvphwdfktaeyhvnypgdlpgykweftrgiglsfgynrnegpehmlsveq
lvytlvdvvskggnlllnvgpkgdgtipdlqkerllglgewlrkygdaiy

Sequence, based on observed residues (ATOM records): (download)

>d1odub2 c.1.8.11 (B:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]}
rykpdweslrehtvpkwfdkakfgifihwgiysvpgwatpdawffqnpyaewyenslrik
esptweyhvktygenfeyekfadlftaekwdpqewadlfkkagakyvipttkhhdgfclw
gtkytdfnsvkrgpkrdlvgdlakavreaglrfgvyysggldwrfttepirypedlsyir
pntyeyadyaykqvmelvdlylpdvlwndmgwpekgkedlkylfayyynkhpegsvndrw
gvphwdfktaelpgykweftrgiglsfgynrnegpehmlsveqlvytlvdvvskggnlll
nvgpkgdgtipdlqkerllglgewlrkygdaiy

SCOPe Domain Coordinates for d1odub2:

Click to download the PDB-style file with coordinates for d1odub2.
(The format of our PDB-style files is described here.)

Timeline for d1odub2:

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Domains from same chain:
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d1odub1