Lineage for d1oarm_ (1oar M:)

  1. Root: SCOPe 2.02
  2. 1103260Class b: All beta proteins [48724] (174 folds)
  3. 1103261Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1103262Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1103263Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 1105202Protein Immunoglobulin light chain lambda variable domain, VL-lambda [88534] (9 species)
    VL-lambda domains of human antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the human genome; mouse VL-lambda domains belong to a single germline family
  7. 1105343Species Norway rat (Rattus norvegicus) [TaxId:10116] [101504] (8 PDB entries)
  8. 1105350Domain d1oarm_: 1oar M: [92714]
    Other proteins in same PDB: d1oarh_, d1oari_, d1oarj_, d1oark_
    part of IgE Fv spe-7
    complexed with azn, cac, cl, dms, edo, na

Details for d1oarm_

PDB Entry: 1oar (more details), 2.22 Å

PDB Description: Fv IgE SPE-7 in complex with Alizarin Red
PDB Compounds: (M:) immunoglobuling e

SCOPe Domain Sequences for d1oarm_:

Sequence, based on SEQRES records: (download)

>d1oarm_ b.1.1.1 (M:) Immunoglobulin light chain lambda variable domain, VL-lambda {Norway rat (Rattus norvegicus) [TaxId: 10116]}
vvtqesalttspgetvtltcrsstgavttsnyanwvqekpdhlftgliggtnnrapgvpa
rfsgslignkaaltitgaqtedeaiyfcalwysnhlvfgggtkltvl

Sequence, based on observed residues (ATOM records): (download)

>d1oarm_ b.1.1.1 (M:) Immunoglobulin light chain lambda variable domain, VL-lambda {Norway rat (Rattus norvegicus) [TaxId: 10116]}
vvtqesalttspgetvtltcravttsnyanwvqekpdhlftgliggtnnrapgvparfsg
slignkaaltitgaqtedeaiyfcalwysnhlvfgggtkltvl

SCOPe Domain Coordinates for d1oarm_:

Click to download the PDB-style file with coordinates for d1oarm_.
(The format of our PDB-style files is described here.)

Timeline for d1oarm_: