SCOP 1.73: Domain d1nakm2: 1nak M:108-212

Lineage for d1nakm2 (1nak M:108-212)

1. Root: SCOP 1.73

2. Class b: All beta proteins [48724] (165 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (4 families)

5. Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (23 proteins)

6. Protein Immunoglobulin light chain kappa constant domain, CL-kappa [88566] (3 species)

7. Species Mouse (Mus musculus) [TaxId:10090] [88567] (311 PDB entries)

8. Domain d1nakm2: 1nak M:108-212 [91760]
   Other proteins in same PDB: d1nakh1, d1nakh2, d1naki1, d1naki2, d1nakl1, d1nakm1
   part of Fab 83.1 against HIV-1 gp120

Details for d1nakm2

PDB Entry: 1nak, 2.57 Å

PDB Description: igg1 fab fragment (83.1) complex with 16-residue peptide (residues 304-321 of hiv-1 gp120 (mn isolate))

PDB Compounds: (M:) Fab 83.1 - light chain

SCOP Domain Sequences for d1nakm2:

Sequence; same for both SEQRES and ATOM records:

>d1nakm2 b.1.1.2 (M:108-212) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}
radaaptvsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqd
skdstysmsstltltkdeyerhnsytceathktstspivksfnrn

Timeline for d1nakm2:

• d1nakm2 first appeared in SCOP 1.67
  
• d1nakm2 appears in SCOP 1.71
  
• d1nakm2 appears in SCOP 1.75
  
• d1nakm2 appears in the current release, SCOPe 2.08