Lineage for d1n0xk1 (1n0x K:1-113)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2021374Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2021375Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2021376Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2021582Protein Immunoglobulin heavy chain variable domain, VH [88543] (22 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2021692Species Human (Homo sapiens), cluster 1 [TaxId:9606] [88544] (37 PDB entries)
  8. 2021696Domain d1n0xk1: 1n0x K:1-113 [91530]
    Other proteins in same PDB: d1n0xh2, d1n0xk2, d1n0xl1, d1n0xl2, d1n0xm1, d1n0xm2
    part of an anti HIV-1 Fab
    complexed with cxs, gol, k, so4

Details for d1n0xk1

PDB Entry: 1n0x (more details), 1.8 Å

PDB Description: crystal structure of a broadly neutralizing anti-hiv-1 antibody in complex with a peptide mimotope
PDB Compounds: (K:) immunoglobulin heavy chain

SCOPe Domain Sequences for d1n0xk1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1n0xk1 b.1.1.1 (K:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

SCOPe Domain Coordinates for d1n0xk1:

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Timeline for d1n0xk1: