SCOPe 2.06: Family c.97.1.2: Deoxycytidylate deaminase-like

Lineage for Family c.97.1.2: Deoxycytidylate deaminase-like

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
   core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest

4. Superfamily c.97.1: Cytidine deaminase-like [53927] (7 families)
   contains extra C-terminal strand 5, order 21345

5. Family c.97.1.2: Deoxycytidylate deaminase-like [89800] (8 proteins)
   strand 5 is parallel to strand 4

Proteins:

1. Cytidine and deoxycytidylate deaminase CodA [142835] (1 species)

   • Species Agrobacterium tumefaciens [TaxId:358] [142836] (1 PDB entry)
     Uniprot Q8UHJ4 2-131

2. Cytosine deaminase [89801] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [89802] (7 PDB entries)

3. Deoxycytidylate deaminase [117756] (1 species)

   • Species Bacteriophage T4 [TaxId:10665] [117757] (2 PDB entries)
     Uniprot P16006

4. Guanine deaminase GuaD [110765] (1 species)

   • Species Bacillus subtilis [TaxId:1423] [110766] (2 PDB entries)
     Uniprot O34598

5. Putative deaminase NE0047 [142833] (1 species)

   • Species Nitrosomonas europaea [TaxId:915] [142834] (9 PDB entries)
     Uniprot Q82Y41 1-189

6. Riboflavin biosynthesis protein RibD [142837] (2 species)

   1. Species Bacillus subtilis [TaxId:1423] [142838] (4 PDB entries)
      Uniprot P17618 1-145

   2. Species Thermotoga maritima [TaxId:2336] [142839] (1 PDB entry)
      Uniprot Q9X2E8 1-147

7. tRNA adenosine deaminase TadA [142840] (3 species)

   1. Species Aquifex aeolicus [TaxId:63363] [142843] (1 PDB entry)
      Uniprot O67050 1-151

   2. Species Escherichia coli [TaxId:562] [142842] (1 PDB entry)
      Uniprot P68398 13-168

   3. Species Staphylococcus aureus [TaxId:1280] [142841] (1 PDB entry)
      Uniprot Q99W51 1-151

8. automated matches [191178] (1 species)
   not a true protein

   • Species Salmonella enterica [TaxId:28901] [189434] (1 PDB entry)

More info for Family c.97.1.2: Deoxycytidylate deaminase-like

Timeline for Family c.97.1.2: Deoxycytidylate deaminase-like:

• Family c.97.1.2: Deoxycytidylate deaminase-like first appeared in SCOP 1.65
  
• Family c.97.1.2: Deoxycytidylate deaminase-like appears in SCOPe 2.05
  
• Family c.97.1.2: Deoxycytidylate deaminase-like appears in SCOPe 2.07
  
• Family c.97.1.2: Deoxycytidylate deaminase-like appears in the current release, SCOPe 2.08