Class c: Alpha and beta proteins (a/b) [51349] (148 folds) |
Fold c.111: Activating enzymes of the ubiquitin-like proteins [69571] (1 superfamily) 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 32145678; strands 6 and 8 are antiparallel to the rest |
Superfamily c.111.1: Activating enzymes of the ubiquitin-like proteins [69572] (3 families) transfer adenylyl group to the C-terminal carboxyl group of the ubiquitin and MoaD/ThiS-related proteins the ATP nucleotide-binding site is similar to that of the NAD-binding Rossmann-folds |
Family c.111.1.2: Ubiquitin activating enzymes (UBA) [89763] (3 proteins) the common fold is elaborated with additional (sub)domains |
Protein UBA3 [89764] (1 species) a subunit of the heterodimeric E1 enzyme for NEDD8; contains an all-alpha insert subdomain of the FF-like fold (residues 210-288) and an extra C-terminal alpha+beta subdomain (partly disordered) |
Human (Homo sapiens) [TaxId:9606] [89765] (12 PDB entries) Uniprot Q8TBC4 33-458 |
Domain d1r4mb_: 1r4m B: [97000] Other proteins in same PDB: d1r4ma_, d1r4mc_, d1r4me_, d1r4mg_, d1r4mi_, d1r4mj_, d1r4mk_, d1r4ml_ complexed with zn |
Domain d1r4md_: 1r4m D: [97002] Other proteins in same PDB: d1r4ma_, d1r4mc_, d1r4me_, d1r4mg_, d1r4mi_, d1r4mj_, d1r4mk_, d1r4ml_ complexed with zn |
Domain d1r4mf_: 1r4m F: [97004] Other proteins in same PDB: d1r4ma_, d1r4mc_, d1r4me_, d1r4mg_, d1r4mi_, d1r4mj_, d1r4mk_, d1r4ml_ complexed with zn |
Domain d1r4mh_: 1r4m H: [97006] Other proteins in same PDB: d1r4ma_, d1r4mc_, d1r4me_, d1r4mg_, d1r4mi_, d1r4mj_, d1r4mk_, d1r4ml_ complexed with zn |
Domain d1r4nb_: 1r4n B: [97012] Other proteins in same PDB: d1r4na_, d1r4nc_, d1r4ne_, d1r4ng_, d1r4ni_, d1r4nj_, d1r4nk_, d1r4nl_ complexed with atp, zn |
Domain d1r4nd_: 1r4n D: [97014] Other proteins in same PDB: d1r4na_, d1r4nc_, d1r4ne_, d1r4ng_, d1r4ni_, d1r4nj_, d1r4nk_, d1r4nl_ complexed with atp, zn |
Domain d1r4nf_: 1r4n F: [97016] Other proteins in same PDB: d1r4na_, d1r4nc_, d1r4ne_, d1r4ng_, d1r4ni_, d1r4nj_, d1r4nk_, d1r4nl_ complexed with atp, zn |
Domain d1r4nh_: 1r4n H: [97018] Other proteins in same PDB: d1r4na_, d1r4nc_, d1r4ne_, d1r4ng_, d1r4ni_, d1r4nj_, d1r4nk_, d1r4nl_ complexed with atp, zn |
Domain d1tt5b1: 1tt5 B:12-1008 [107292] Other proteins in same PDB: d1tt5a_, d1tt5b2, d1tt5c_ complexed with zn |
Domain d1tt5d_: 1tt5 D: [107294] Other proteins in same PDB: d1tt5a_, d1tt5b2, d1tt5c_ complexed with zn |
Domain d1y8xb1: 1y8x B:349-440 [144607] Other proteins in same PDB: d1y8xa1, d1y8xa2 C-terminal, E2 binding domain only; (this domain belongs to Pfam PF08825) |
Domain d1yovb_: 1yov B: [123786] Other proteins in same PDB: d1yova_, d1yovc_ automated match to d1ngvb_ complexed with zn |
Domain d1yovd_: 1yov D: [123788] Other proteins in same PDB: d1yova_, d1yovc_ automated match to d1ngvb_ complexed with zn |
Domain d2lq7a1: 2lq7 A:348-442 [242963] Other proteins in same PDB: d2lq7a2 automated match to d3fn1a_ |
Domain d3dbhb1: 3dbh B:12-442 [161640] Other proteins in same PDB: d3dbha_, d3dbhb2, d3dbhc_, d3dbhd2, d3dbhe_, d3dbhf2, d3dbhg_, d3dbhh2, d3dbhi2, d3dbhi3, d3dbhj_, d3dbhk_, d3dbhl_ automated match to d1r4mb_ complexed with zn |
Domain d3dbhd1: 3dbh D:12-442 [161641] Other proteins in same PDB: d3dbha_, d3dbhb2, d3dbhc_, d3dbhd2, d3dbhe_, d3dbhf2, d3dbhg_, d3dbhh2, d3dbhi2, d3dbhi3, d3dbhj_, d3dbhk_, d3dbhl_ automated match to d1r4mb_ complexed with zn |
Domain d3dbhf1: 3dbh F:12-441 [161642] Other proteins in same PDB: d3dbha_, d3dbhb2, d3dbhc_, d3dbhd2, d3dbhe_, d3dbhf2, d3dbhg_, d3dbhh2, d3dbhi2, d3dbhi3, d3dbhj_, d3dbhk_, d3dbhl_ automated match to d1r4mb_ complexed with zn |
Domain d3dbhh1: 3dbh H:12-441 [161643] Other proteins in same PDB: d3dbha_, d3dbhb2, d3dbhc_, d3dbhd2, d3dbhe_, d3dbhf2, d3dbhg_, d3dbhh2, d3dbhi2, d3dbhi3, d3dbhj_, d3dbhk_, d3dbhl_ automated match to d1r4mb_ complexed with zn |
Domain d3dblb2: 3dbl B:12-442 [157474] Other proteins in same PDB: d3dbla_, d3dblb3, d3dblc_, d3dbld3, d3dble_, d3dblf3, d3dblg_, d3dblh3, d3dbli2, d3dbli3, d3dblj_, d3dblk_, d3dbll_ automated match to d1r4mb_ complexed with zn |
Domain d3dbld2: 3dbl D:12-442 [157476] Other proteins in same PDB: d3dbla_, d3dblb3, d3dblc_, d3dbld3, d3dble_, d3dblf3, d3dblg_, d3dblh3, d3dbli2, d3dbli3, d3dblj_, d3dblk_, d3dbll_ automated match to d1r4mb_ complexed with zn |
Domain d3dblf2: 3dbl F:12-441 [157478] Other proteins in same PDB: d3dbla_, d3dblb3, d3dblc_, d3dbld3, d3dble_, d3dblf3, d3dblg_, d3dblh3, d3dbli2, d3dbli3, d3dblj_, d3dblk_, d3dbll_ automated match to d1r4mb_ complexed with zn |
Domain d3dblh2: 3dbl H:12-441 [157480] Other proteins in same PDB: d3dbla_, d3dblb3, d3dblc_, d3dbld3, d3dble_, d3dblf3, d3dblg_, d3dblh3, d3dbli2, d3dbli3, d3dblj_, d3dblk_, d3dbll_ automated match to d1r4mb_ complexed with zn |
Domain d3dbrb1: 3dbr B:12-442 [239202] Other proteins in same PDB: d3dbra_, d3dbrb2, d3dbrc_, d3dbrd2, d3dbre_, d3dbrf2, d3dbrg_, d3dbrh2, d3dbri1, d3dbri2, d3dbrj1, d3dbrj2, d3dbrk1, d3dbrk2, d3dbrl1, d3dbrl2 automated match to d3dbhb_ complexed with zn |
Domain d3dbrd1: 3dbr D:12-441 [239203] Other proteins in same PDB: d3dbra_, d3dbrb2, d3dbrc_, d3dbrd2, d3dbre_, d3dbrf2, d3dbrg_, d3dbrh2, d3dbri1, d3dbri2, d3dbrj1, d3dbrj2, d3dbrk1, d3dbrk2, d3dbrl1, d3dbrl2 automated match to d3dbhb_ complexed with zn |
Domain d3dbrf1: 3dbr F:12-441 [239204] Other proteins in same PDB: d3dbra_, d3dbrb2, d3dbrc_, d3dbrd2, d3dbre_, d3dbrf2, d3dbrg_, d3dbrh2, d3dbri1, d3dbri2, d3dbrj1, d3dbrj2, d3dbrk1, d3dbrk2, d3dbrl1, d3dbrl2 automated match to d3dbhb_ complexed with zn |
Domain d3dbrh1: 3dbr H:12-441 [239205] Other proteins in same PDB: d3dbra_, d3dbrb2, d3dbrc_, d3dbrd2, d3dbre_, d3dbrf2, d3dbrg_, d3dbrh2, d3dbri1, d3dbri2, d3dbrj1, d3dbrj2, d3dbrk1, d3dbrk2, d3dbrl1, d3dbrl2 automated match to d3dbhb_ complexed with zn |
Domain d3fn1a_: 3fn1 A: [210014] Other proteins in same PDB: d3fn1b_ automated match to d1y8xb1 |
Domain d3gznb_: 3gzn B: [246397] Other proteins in same PDB: d3gzna_, d3gznc_, d3gzni1, d3gzni2, d3gznj1, d3gznj2 automated match to d3dbhb_ complexed with b39, zn |
Domain d3gznd_: 3gzn D: [246399] Other proteins in same PDB: d3gzna_, d3gznc_, d3gzni1, d3gzni2, d3gznj1, d3gznj2 automated match to d3dbhb_ complexed with b39, zn |
Timeline for Protein UBA3 from c.111.1.2: Ubiquitin activating enzymes (UBA):